Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01007 ATGGGGAAGAAAAAGAAGCAGGTAGGAGAAACAAGTGAAGATAGAGGAAATCATAAGAATGTTCAAGATAAAAGCCCTAAATCATATGACAATGATAACTTGGTGTTTATATCAATGGCTCTAGAGTTGAAGGATGAAGGGAACAAGCTTTTCCAGAAGCGGAAGGTTGAAGGAGCTTTGGTAAAATTTGAGAAGGCCTTGAAATTGCTTCCAAAAAATCATGTAGATGTGTCCTATCTGCGGAGTAACATGGCTGCATGTTACATGCAAAAGGGTCTCAGTGAGTATCCTAAAGCAATCCATGAATGCAATTTGGCTCTTGAAGTAACACCAAGCTATAGTAAAGCTCTGATGAAGAGGGCAAGGTGTTATGAGGCTTTAAATAGGCTGGATTTAGCTCTGAGAGATGTTAGTACTGTTTTGAAGATTGAACCAAATAATATAATGGCATTGGAGGTCTTGGGGAAGGTGAAGCATTCACTTGAAGATAGGGGATTAGTAGTAAATGATACAGAAATTGAGTTGCCTCCAGATTATGTTGAACCTCCTGCTTTGCCTCAGGAAAAAGTAGTGAAAGAAAAGACACATAAGAAGAAGAAGAAAAAAGAGAAGGTGAAGGCTCCTGATAAAATTGAAGAAAAGCAAGCTGAGGAAAAAATTGAAGAGAAGAGAGCAGAGGAAAGCATTGTGGAAACAAAGGAAGAGGACAGTCAGAAACAAAATAAGGGTAACAAATCTAAAAAGAAGAAAGCCAAGGAAAAAATTGATGAGAGGAAGGATGATGTTAAGGAAGTTATTGAGGCAGAAAGTAATGTTAGAAATGAAGATATACCTAAGAAGACAGCAAAACTTATTTTTGGTGAGGATATAAGATGGGCTGAATTGCCTGTTAATTGCAGTCTCATTCATCTAAGAGAAATTATCTGTGACCGGTTTCCTAGACTAGGAGCAGTTCTTGTCAAATATAGGGACCAAGAGGGTGATCTGGTCACTATCACTTCTGATGAAGAATTAAGGTGGGCTGAAACAGGAACACAGGGTTCTATCCGACTGTACATAGTGGAAGCTAATCCTGATCATGATCCATTCTTCAGGAAACATAATGTGAAGCATGGAGAAAAGGTTAACATTGATACTAGTCCTGTGAATGGTTCTGTGGTGAAAGCAAAGGACATTATTAGTTCATCTTGCATTGAGGATTGGATAATTCAGTTTGCACACCTGTTCAAGAACCATACTGGGTTTGAATCTGACAGATATTTAGATTTTCATGAACTTGGGATGAAGCTCTATTCAGAGGCTGTGGAGGATACAATTGCAAGTGAGGAAGCACAAGGCATACTTGACATTGCTGGAGGTAAGTTCCAAGAGATGGCAGCTTTAGCATTGCTCAACTGGGGAAATGTGCATATGTCCAGGGCAAGGAAGAAAGTGTATTTTACAGAAGATTCTTCTAAAGAGCATCTGCTGTTTGAGCAAGCAAAACTTTCTTGGGATTATGCACTATGTAGTAATGTAGACTTAGCAACGTGGCCCTCCACTGAGGTTATTCAGCTTTACAATAGTGCTGAGGATAATATGGAGAAAGGAATGCTGATATGGGAAGAATCTGGAGAGCAACAGTTGACTGAAACCTCCAATCCCAAGGATATTAGACTACATTTGCATAACATGGGGTTGGATGGTCTATTCAAAACTATGTCATCAGAGGAAATTGCTGCACAGGTGGCAAATATGAGGACTCAAATAAATCTTCTGTGGGGTACCATGCTATATGAACGCTCCATAATGGAATTCAAATTAGGGATACCGGTTTGGCGTGATTGTCTGGAAGTTGCAGTTGAGAAATTTGAACTTGCTGGAGCTTCTGCAATGGATATAGCTGTAATGTTGAATAACCACTGTTCAAATAACACTGCTGTAGATGGTCACGGATTCAAAATTGATGAAATAGTACAAGCATGGAATGAGATGTACGAAGCTAAAAAGTTGAAGAAAGGCGTTCCATCATTTCGTTTGGAGCCTTTGTTTAGAAGAAGAATATCTAAAATTTACCATGCGTTTGAGCTTGTATGAGTTGCATCTTTTTCTCCAAGTTGTTGAAGAATAACAGAGTCAACACCCACATGGGTAGCTTCTGTGCCTGAAAGACTATTGTTATCATTAAGGTTTCTGTGCCTACTTTCAATAGTTTGGAGTCAACACTGTACTTATAGAAAGAAAACTATCTATGCATTGAGCCTAAATGTTCCAAGTATATAACAGTTTGCAAGTTCCTTGACAGGTTGGGAAGATGGAGTTGCAGAAATGACCTTTTAGTTTCTTTCTGCCTTTGCTCATATCGCCTTCCCTTTATGGTTAGATTTATAGTGGCTGGTAGGATATTAAAGTTATACTGAAAGAAGTTGGAGAGGTTTGTTGTTTTTTCATGTTTCT 2436 0.3879 MGKKKKQVGETSEDRGNHKNVQDKSPKSYDNDNLVFISMALELKDEGNKLFQKRKVEGALVKFEKALKLLPKNHVDVSYLRSNMAACYMQKGLSEYPKAIHECNLALEVTPSYSKALMKRARCYEALNRLDLALRDVSTVLKIEPNNIMALEVLGKVKHSLEDRGLVVNDTEIELPPDYVEPPALPQEKVVKEKTHKKKKKKEKVKAPDKIEEKQAEEKIEEKRAEESIVETKEEDSQKQNKGNKSKKKKAKEKIDERKDDVKEVIEAESNVRNEDIPKKTAKLIFGEDIRWAELPVNCSLIHLREIICDRFPRLGAVLVKYRDQEGDLVTITSDEELRWAETGTQGSIRLYIVEANPDHDPFFRKHNVKHGEKVNIDTSPVNGSVVKAKDIISSSCIEDWIIQFAHLFKNHTGFESDRYLDFHELGMKLYSEAVEDTIASEEAQGILDIAGGKFQEMAALALLNWGNVHMSRARKKVYFTEDSSKEHLLFEQAKLSWDYALCSNVDLATWPSTEVIQLYNSAEDNMEKGMLIWEESGEQQLTETSNPKDIRLHLHNMGLDGLFKTMSSEEIAAQVANMRTQINLLWGTMLYERSIMEFKLGIPVWRDCLEVAVEKFELAGASAMDIAVMLNNHCSNNTAVDGHGFKIDEIVQAWNEMYEAKKLKKGVPSFRLEPLFRRRISKIYHAFELV 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01007 691 Coils Coil 213 235 - -
Pste2g01007 691 Gene3D Tetratricopeptide repeat domain 37 164 IPR011990 GO:0005515
Pste2g01007 691 PANTHER PROTEIN CLMP1 3 489 IPR044517 -
Pste2g01007 691 MobiDBLite consensus disorder prediction 1 27 - -
Pste2g01007 691 CDD PB1 283 353 - -
Pste2g01007 691 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Pste2g01007 691 SUPERFAMILY CAD & PB1 domains 280 368 - -
Pste2g01007 691 Pfam PB1 domain 281 354 IPR000270 GO:0005515
Pste2g01007 691 Coils Coil 248 268 - -
Pste2g01007 691 MobiDBLite consensus disorder prediction 1 26 - -
Pste2g01007 691 MobiDBLite consensus disorder prediction 176 259 - -
Pste2g01007 691 ProSiteProfiles TPR repeat profile. 114 147 IPR019734 GO:0005515
Pste2g01007 691 SUPERFAMILY TPR-like 39 163 IPR011990 GO:0005515
Pste2g01007 691 MobiDBLite consensus disorder prediction 205 242 - -
Pste2g01007 691 ProSiteProfiles PB1 domain profile. 279 356 IPR000270 GO:0005515
Pste2g01007 691 SMART tpr_5 114 147 IPR019734 GO:0005515
Pste2g01007 691 SMART tpr_5 40 73 IPR019734 GO:0005515
Pste2g01007 691 SMART tpr_5 78 113 IPR019734 GO:0005515
Pste2g01007 691 Gene3D - 271 356 - -
Pste2g01007 691 SMART PB1_new 279 356 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01007 Pste-Chr2 10708300 10712738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01007 23 147 Calmodulin-binding Proteins AT3G25230 33.813 7.98e-10 60.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g01007 2 10708300 10712738 Pste2g01007 2 10708300 10712738 ECH
Pste6g03113 6 19353573 19357164 Pste2g01007 2 10708300 10712738 PCT