Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00968 ATGAACAGAAGTTCCTCATCCACTTCCTCTTCCTCGGACTGTTGTTCATCGGAGTCGAACCAAAGGAACAGCGGCAACCCGGACAGAATCAAAGGCCCATGGAGTGCAGAAGAGGATCGGATCCTGACCCGACTGGTAGAGCGGTACGGGCCCCGGAACTGGTCCCTGATAAGCCGGTACATAAAGGGGAGGTCCGGGAAGTCGTGCCGGCTGCGGTGGTGCAACCAGCTGAGCCCCTCAGTGGAACACAGGCCCTTCTCGGCCCAAGAGGACCAGACCATCATCGCCGCCCACGCCCAGTACGGTAACAGGTGGGCCACCATTGCCCGATTGCTGCCCGGCAGAACCGATAACGCCGTTAAGAACCACTGGAACTCCACCCTCAAGCGCAGACCCAAGGTTAATGCCAACAACCAAGGGGGTGCTTCTTCTTCCGCTCCCTCTCGCCACCTCCACGATGACCCGTTGACTGCGTTGACTCTTGCTCCTCCTGGCATTGCTAACGCTTCCGTTCCCGAGGACGCCGTCCCCCACCACCGGGCCTCGCCCGAGTCTGCGCCCGAAGGCTTTTGGGATATGATGAAGGATGTCATCGCCAGGGAAGTCAGGGAATATGTGTCTTCCAATTTTTCTGATAACTCCTCTTTCCATTAA 654 0.5795 MNRSSSSTSSSSDCCSSESNQRNSGNPDRIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVEHRPFSAQEDQTIIAAHAQYGNRWATIARLLPGRTDNAVKNHWNSTLKRRPKVNANNQGGASSSAPSRHLHDDPLTALTLAPPGIANASVPEDAVPHHRASPESAPEGFWDMMKDVIAREVREYVSSNFSDNSSFH 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00968 217 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 132 IPR017930 -
Pste2g00968 217 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 81 IPR017930 -
Pste2g00968 217 MobiDBLite consensus disorder prediction 1 34 - -
Pste2g00968 217 MobiDBLite consensus disorder prediction 129 187 - -
Pste2g00968 217 FunFam MYB transcription factor 31 82 - -
Pste2g00968 217 MobiDBLite consensus disorder prediction 129 146 - -
Pste2g00968 217 Gene3D - 30 82 - -
Pste2g00968 217 Pfam Myb-like DNA-binding domain 34 93 - -
Pste2g00968 217 ProSiteProfiles Myb-like domain profile. 26 77 IPR001005 -
Pste2g00968 217 CDD SANT 33 75 IPR001005 -
Pste2g00968 217 SMART sant 30 79 IPR001005 -
Pste2g00968 217 SMART sant 82 130 IPR001005 -
Pste2g00968 217 ProSiteProfiles Myb-like domain profile. 78 128 IPR001005 -
Pste2g00968 217 PANTHER MYB PROTEIN-RELATED 31 148 - -
Pste2g00968 217 MobiDBLite consensus disorder prediction 1 28 - -
Pste2g00968 217 CDD SANT 85 128 IPR001005 -
Pste2g00968 217 Gene3D - 84 152 - -
Pste2g00968 217 SUPERFAMILY Homeodomain-like 28 124 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00968 Pste-Chr2 10253788 10254441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00968 28 131 MYB Transcription Factor Family AT5G67300 80.769 6.31e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste2g00968 Myb_DNA-bind_6 1.5e-17 CL0123