LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste2g00965	CAAAAAAGAGAGGGACATTTCCATTTTCCATGATTCCATTCCGACCATGTGTGTAATAATATTTTGATAGCAAGATGCGTAATAAAAGCAGCAACCATGTATCCACAGAAAATTCTGGAGTTTAGCCTCAACGTGCTCTTTCGTCTCACTCACACTAAATTACAACTCTTCAAATATATATCACACTTTGTTCTCTACTTTTTGCAACGCACCCTCAGAATCTTTGTTCTCTCTCTCTAATCTATAACACAAGCCACAAAAAACACAAAGTATTGCATCAAGATCAGTGATATTAGTTATTTGTTATTGCTATCACTTTCCAGATCAACAAAGAACCGCTACTATATACTCCACGATATTTTGCTGGTGCCACCATGTGTGTGCAGGACGCAGAGAAAGATGTGGATAACACCACAACTAGTTCATGGCCTTTGCATTGTCACCTTTTGCTCACGACCCACATGGACAAAAATGGATCTTTTCTCAGAACTTCCAGGGATGACACCAAGAACAATATGATCAGTGTTCAAAGTTCTTTCCCTCTAGAAAGCATACGTGAGGACGCAGTTATTGCAGACAAGAAACAGAATCTGATGAGTTTTGTTCCAGCTCTTCGGTCTGGAGAGTGGTCTGACATTGGAGAACGCCCTTACATGGAAGATACTCACATATGCATTGGAGATTTGGCAAAGAAGTTTAATTATGATGTACTTGCTGAGGATGTTGTTTCTTTTTATGGAGTATTTGATGGACATGGAGGAAAGAGTGCTGCACAATTTGTCCGTGATAATTTGCCAAGAGTTATTGTTGAGGATGTTAACTTTCCTTTGGAGCTTGAGAAAGTTGTCAAAAGGTCATTTTTGGAGACTGATGCAGCATTTTTAGAAACATCCACTCATGAGCCTTCCCTTTCTTCTGCCAATGCTGGAGATTGCCGGGCTGTCTTGTCTCGCCATGGAAGGGCCATAGAAATGTCTAAAGATCATAGGCCAAACTGCACCAATGAAAGATCACGCATCCAGTCTGTAGGTGGCTTTGTTGATGATGGTTACCTGAATGGCCAGTTAGGTGTTACTCGAGCTCTTGGAGACTGGCACCTTGAAGGAATGAAGGAAATGAGTGAAAGAGGAGGACCACTGAGTGCTGAACCAGAACTTAAATTGATCACATTGACCAAAGAAGATGAATTCTTGATAATTGCTAGTGATGGAATATGGGATGTTTTTAGTAGCCAAAATGCTATAGATTTTGCTAGAAGGAAGCTTCAAGAGCACAATGATGAGAAACTATGCTGCAAGGAGATAGTACAGGAAGCAATCAAGAGAGGATCAACAGATAACTTGACAGTTGTGATGGTATGTTTTAACTTTGATCCACCACCACCTGTGGTTGTGGAAAGAACACGCGTAAGAAGAAGCATATCAGCAGAGGGACTTCAGAACCTTAGATGCCTGCTACAAGAATAA	1466	0.4079	MCVQDAEKDVDNTTTSSWPLHCHLLLTTHMDKNGSFLRTSRDDTKNNMISVQSSFPLESIREDAVIADKKQNLMSFVPALRSGEWSDIGERPYMEDTHICIGDLAKKFNYDVLAEDVVSFYGVFDGHGGKSAAQFVRDNLPRVIVEDVNFPLELEKVVKRSFLETDAAFLETSTHEPSLSSANAGDCRAVLSRHGRAIEMSKDHRPNCTNERSRIQSVGGFVDDGYLNGQLGVTRALGDWHLEGMKEMSERGGPLSAEPELKLITLTKEDEFLIIASDGIWDVFSSQNAIDFARRKLQEHNDEKLCCKEIVQEAIKRGSTDNLTVVMVCFNFDPPPPVVVERTRVRRSISAEGLQNLRCLLQE	363

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pste2g00965	363	FunFam	Probable protein phosphatase 2C 22	65	333	-	-
Pste2g00965	363	PANTHER	PROTEIN PHOSPHATASE 2C	69	328	IPR015655	GO:0004722\|GO:0006470
Pste2g00965	363	SUPERFAMILY	PP2C-like	72	331	IPR036457	-
Pste2g00965	363	ProSiteProfiles	PPM-type phosphatase domain profile.	81	330	IPR001932	-
Pste2g00965	363	ProSitePatterns	PPM-type phosphatase domain signature.	120	128	IPR000222	GO:0043169
Pste2g00965	363	SMART	PP2C_4	71	328	IPR001932	-
Pste2g00965	363	CDD	PP2Cc	81	330	IPR001932	-
Pste2g00965	363	Gene3D	-	77	338	IPR036457	-
Pste2g00965	363	Pfam	Protein phosphatase 2C	93	322	IPR001932	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste2g00965	Pste-Chr2	10234975	10238485	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste2g00965	49	361	PP2C-type Phosphatase Gene Family	AT2G25620	53.172	3.75e-117	343

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	DBP	Pste2g00965		PP2C	1.1e-56	CL0238

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste2g00965	2	10234975	10238485	Pste2g00965	2	10234975	10238485	ECH
	Pste6g03138	6	19672943	19676114	Pste2g00965	2	10234975	10238485	PCT

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