Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00951 CCCAAATCACAAATCACAAATCACTTCCACGTTATCACCAATCCCACCCTCCGATCCTCGATCTTCGTGTCATCGCGTCAAAAGTCTCCCCCACCCCCATAGATAAAGCCTTTTCCAAACCCTCACTTCCTAATTCTCCAACCTCGTTTCACTGCCGTGAATTCCAATTAAATGCACTGCGAGAGGAGGGACTGAAAACGCCGCTTAAACCAAAAAAAGCGCTTAATCAGAATGGCTTTCCACGAGCACCTCCCGCACGAAATCACGTTCCAGCCATTCACGGACGAGCATCAGCAGCAGCAGCTAGGCCAGAGCCGCGACATGCAGCGCCTGCTGCCGCTCTCCGGCGCCGCCGCCCCTACCTGGCTCAACGGCGCCTCCGCCTCCACGCTCCGGCAGCAGAACTTCCTCCACCTGCAGCCGGATTCCACCACGGCGCCGCAGAACGACGATGTGCGCGCCGCGCTCGACCGGAACCGGACCGAGAGCAACTCCGAACCGGACGATTTGGCGGAATTCAAAGCGGACATTCTCGGCCACCCTCTCTACGATCAGCTCCTATCGGCGCACGTCTCGTGTTTGAGAATCGCCACGCCCGTTGACCAGCTTCCGCGGATCGACGCGCAGCTTCAACAGTCGCAGCGCGTGGTCGATAAGTACTCCGCCCTCGGAAACGGCGTCGTCGACGACAAAGAGCTTGATCAATTCATGGTTCTAGGCGCAGAATGCACAAAATGGACAAAAAGCAAGAGAGAGAAAGAGGGAGGGGAAAAAGTAATGTTTCTTTTACATACGCATTATGTGATACTTCTCTGTGCTTTCAAAGAACAATTGCAACAACATGTCCGTGTTCATGCCATGGAAGCTGTTATGGCTTGTTGGGAGCTGGAGCAATCTCTACAAAGCTTGACTGGTGTATCTCCAGGTGAAGGAACAGGAGCAACAATGTCTGACGATGAAGAAGACCAAGCAGAGAGTAATGCCAACTTATATGAAGGAAGCATGGATGGTGCTGATAGTCTCAGCTTTGGTCCTCTTGTTCCCACTGAGACTGAAAGATCTTTGATGGAGCGTGTGAGACAGGAGTTGAAGCACGAGTTAAAACAGGGTTACAAGGACAAAATTGTGGACATAAGAGAAGAAATTCTAAGAAAGAGAAGAGCGGGAAAGCTACCAGGGGACACCACTTCCCTTTTAAAAGCTTGGTGGCAATCACATTCTAAATGGCCCTATCCAACTGAAGAAGACAAGATCAGGTTGGTGCAGGAAACAGGCTTGCAATTGAAGCAGATAAATAACTGGTTCATAAATCAAAGAAAAAGGAACTGGCATACTAATCCTTCGTCCTCTAGTGGCTCCAAAAGCAAACGCAAGAGGTGGGTTTGTAGTTTCTGTTGGCAGCTTCTGTTAATTGGAAATTTGGAACTATTTTGA 1434 0.5028 MAFHEHLPHEITFQPFTDEHQQQQLGQSRDMQRLLPLSGAAAPTWLNGASASTLRQQNFLHLQPDSTTAPQNDDVRAALDRNRTESNSEPDDLAEFKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSALGNGVVDDKELDQFMVLGAECTKWTKSKREKEGGEKVMFLLHTHYVILLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDEEDQAESNANLYEGSMDGADSLSFGPLVPTETERSLMERVRQELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKIRLVQETGLQLKQINNWFINQRKRNWHTNPSSSSGSKSKRKRWVCSFCWQLLLIGNLELF 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00951 400 SMART ELK_2 285 306 IPR005539 GO:0003677
Pste2g00951 400 SMART KNOX2_2 146 228 IPR005541 GO:0003677|GO:0005634
Pste2g00951 400 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 31 370 - -
Pste2g00951 400 ProSiteProfiles 'Homeobox' domain profile. 305 368 IPR001356 GO:0003677
Pste2g00951 400 Pfam Homeobox KN domain 325 364 IPR008422 GO:0003677|GO:0006355
Pste2g00951 400 ProSiteProfiles ELK domain profile. 285 305 IPR005539 GO:0003677
Pste2g00951 400 SMART KNOX1_2 94 138 IPR005540 GO:0003677|GO:0005634
Pste2g00951 400 Pfam KNOX2 domain 189 227 IPR005541 GO:0003677|GO:0005634
Pste2g00951 400 CDD homeodomain 308 369 IPR001356 GO:0003677
Pste2g00951 400 Pfam ELK domain 285 306 IPR005539 GO:0003677
Pste2g00951 400 FunFam homeobox protein knotted-1-like 3 isoform X1 306 367 - -
Pste2g00951 400 SMART HOX_1 307 372 IPR001356 GO:0003677
Pste2g00951 400 MobiDBLite consensus disorder prediction 227 248 - -
Pste2g00951 400 Gene3D - 304 380 - -
Pste2g00951 400 MobiDBLite consensus disorder prediction 1 28 - -
Pste2g00951 400 SUPERFAMILY Homeodomain-like 307 371 IPR009057 -
Pste2g00951 400 Pfam KNOX1 domain 97 137 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00951 Pste-Chr2 10129169 10136397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00951 94 382 Homeobox Transcription Factor Family AT5G25220 76.109 1.04e-156 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pste2g00951 KNOX1 1.2e-17 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g00951 2 10129169 10136397 Pste2g00951 2 10129169 10136397 ECH
Pste6g03155 6 19794269 19796308 Pste2g00951 2 10129169 10136397 PCT