Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00943 ATGGTTTTGGACATGGAGAAGAGTATATACACTTTTCTCACTGTGCATCGTTGGGACTCGCTAAACTGTATGAAATATAGGTTGGCTTCCCTTAGGCCTGTGCATGGAAGGTTGGCTCTGAAATTTCTCAATTGGTTCATAAAGCAACCCAATTTGGAGCTCAATCATGTTACTCATATTGTTTGCACTACTACCCACGTACTTGTTAGAGCTAGAATGTACAACTTTGCCAAAACAACCTTGAAGCATCTGTTGCAACTGCCCATTGGTTTGAACTCTGTTTTCAGGGCCTTGATGGAGACATACCCCATTTGCAACTCAAACCCTGCTGTTTTTGATCTCTTGATTAGGGTTTGTTTGAGGGACAAGATGGTTGGAGAGGCTGTGCAGACTTTCTACTTGATGGGGTTTCGAGGACTGAAGCCATCTGTATATACTTGTAACATGGTTTTAGGTTCTCTTGTGAAGGAGCAGAAAGTTGATATGTTTTGGTCTTTTTTTAAAAGTATGCTTGCCAAGGGGATTTGTCCTGATGTTGCTACATTCAACATATTGTTGAATGCTTTGTGCGAGCGAGGGAAGGAAAGCAGGAGTGCAAAAGGTTATTTATTATTGAAAAGGATGAGAAAGAATACGGTGTATCCTAATGCAATAACTTATAATACTCTTATTAATGGATTTGTCAAGGAGGGGAAATTTGAAGTTGCCACAAAAGTTTTTGAAGAGATGTCATCATTTAATTTGTTACCCAACAGTGCAACATACAATACTTTGATTACTGGGCACTGTAGGACGGGCAACATTGGGGAGGCATTGAGACTAATGGATGTTATGGTATTGCATGGTTTGATACCAAATGAAGTAACATACGGGACTCTTTTGAATGGGCTATCCAAGCATGCTGAATTTGGATTGGTTTCTAGTATTCTTGAGAGAATGAGGATGGATGGGGTGCAAGTTGGTCATATTAGTTATACAGCAATAATTGATGGATTGTGTAAGAACGGCATGCTGGAAGAAGCTGTAAAGTTGCTGGATTATATGTTAAAAGTTTATGTCAGTCCTGATGTTGTTACATTTTCTGTGCTGATAAATGGATTTTTCAGGGTGGGGAAGATAAATAATGCAAAGGAGATTATCTGTAGGATGTATAAGATTGGAATTGTGCCAAATAGCATTTTGTATTCAACATTAATCTACAATTATTGCAAAATGGGATACTTGAAAGAGGCATTAAATGCTTATGCAATTATGAATCATAGTGGTCATGTTGCTGATCACTTTACATGTAATGTGTTGATTGCCACTTTCTGTAGATATGGGAGACTTGAAGAGGCTGAGTATTTTATGGATCACATGAGCAGGATGGGACTTGATCCTAACTCCATTACTTTTGATTGTGTTATAAATAGTTATGGAAATTCTGGTGATGCATTAAAAGCATTTTCTATGTGTGATAAAATGAATAGTTTAGGCCATTTCCCAACTCAATTCACGTATGGGGCTCTATTGAAAGGACTTTGTATCAGTGGACATATTAATGAAGCCTGGAAATTTTTCCACAGACTTCATTGCATTCCTAATGCTGTTGATAATGTTACCTTCAACATAATACTTACTTCTACATGTAGATCAGGAAATTTATCTGATGCAGTTTCCCTTATCAATGAGATGGTTACAAATGATATTTTGCCTGACAATTTCACATACACTAATCTTATTGCAGGGCTATGCAAGAAGGGTAAAATAGTTGCTGCACTCCTTTTGTCAGGGAAGGCAATTGAAAAAGGATTATTATCTCCAAATCCTGCTGTGTACACTAGTTTAGTTGATGGTCTTCTTAAGCATGGATATTCAAGAGAAGCTTTGTATATTTTTGAAGAAATGCTGAACAAAGGCGTTGACCCTGATACTATAGCATTCAATGTAATTATAGATCGATACTCAAGGAAAGGGAAAATTTCAAAGGTCAATGATATTCTTTCAACAATGAAGAGTAGAAATTTATGCTTGAATTTGGCTACTTACAATATCCTGCTACATGGATATGCAAAGAGGCAAGCTATGGGAAGATGTTTTATGTTGTGCAAAGACATGATTAGACACGGTTTTGTGCCAGATAAGTTTTCTTGGCACTCTCTTATTCTTGGGTATTGTAAGTCCAAATCATTTGATGTTGCTATTAAAATTTTAAGATGGATAACATTGAAAGGTTTTATAACTGATTGTTCTACATTTAACTTGCTTATTACCAAGTTCTGTGAAAGGAATGAGATGAAAAAGGCCTGCGATCTGCTAAATCAAATGAATCAGTTTAATGTTATTCCTAATGCAGATACATATAATGCCCTTTTTAATGGACACATTAGAACTAGTGATTTTGATAAAGCTCATCTTGTTTTGCAAGCCTTGTTGGAAAGTGGTTCTGTTCCTACAAATAAACAATATATCACTTTAATCAAAGGCATGTGTAGAGTTGGAAACGTAAAAGGAGCATTGAAACTGCAAGATGAAATGAAAGCACTTGGTGTCAGCTCCCACAATGTTGCTATGAGTGCTATTGTTAGAGGGCTTGCACGTTCCAGGAAGATTGCAAATGCTATTTGGGTTCTTGATTTGATGCTTGAGATGCAAATCGTTCCAACTGTTGCTACTTTCACTACTTTAATGTATGTCTATTGTAAGGAAGCTAATATTGCAAAGGCTTTAGAATTGAGGAGCATAATGGAACATTGTCATGTGAAGCTTGATGTAGTTTCATACAATGTTCTTATATCTGGCCTTTGTGGTAATGGTGATATTGAAGCTGCTTTTAAACTTTATGAAGAGATGAAACAAAGAGATCTTTGGCCTAATACCTCTATATACATAGTTCTTATTGATTCTTTGTGTGTTGGAAATTATCATATTGAAAGTGAAAAACTTTTGATGGACTTACAAAAGAGGGAACTGATGAGACTGAGCCGACAGTTCTGTTACTCATCCAGAAGTGATATTGCTGTATGGTCTGTACTTTTTTCTGGGTCAGTCCATTTGCAGAGATTTTCACTCAGTTTAGAGCATGAGGAAAAAGTAGTGCACCTCTCTGCTAGGATAAAATCCTTTGGGAGACAGACACCTGCATCAGATATCCTTGTATGA 3141 0.3674 MVLDMEKSIYTFLTVHRWDSLNCMKYRLASLRPVHGRLALKFLNWFIKQPNLELNHVTHIVCTTTHVLVRARMYNFAKTTLKHLLQLPIGLNSVFRALMETYPICNSNPAVFDLLIRVCLRDKMVGEAVQTFYLMGFRGLKPSVYTCNMVLGSLVKEQKVDMFWSFFKSMLAKGICPDVATFNILLNALCERGKESRSAKGYLLLKRMRKNTVYPNAITYNTLINGFVKEGKFEVATKVFEEMSSFNLLPNSATYNTLITGHCRTGNIGEALRLMDVMVLHGLIPNEVTYGTLLNGLSKHAEFGLVSSILERMRMDGVQVGHISYTAIIDGLCKNGMLEEAVKLLDYMLKVYVSPDVVTFSVLINGFFRVGKINNAKEIICRMYKIGIVPNSILYSTLIYNYCKMGYLKEALNAYAIMNHSGHVADHFTCNVLIATFCRYGRLEEAEYFMDHMSRMGLDPNSITFDCVINSYGNSGDALKAFSMCDKMNSLGHFPTQFTYGALLKGLCISGHINEAWKFFHRLHCIPNAVDNVTFNIILTSTCRSGNLSDAVSLINEMVTNDILPDNFTYTNLIAGLCKKGKIVAALLLSGKAIEKGLLSPNPAVYTSLVDGLLKHGYSREALYIFEEMLNKGVDPDTIAFNVIIDRYSRKGKISKVNDILSTMKSRNLCLNLATYNILLHGYAKRQAMGRCFMLCKDMIRHGFVPDKFSWHSLILGYCKSKSFDVAIKILRWITLKGFITDCSTFNLLITKFCERNEMKKACDLLNQMNQFNVIPNADTYNALFNGHIRTSDFDKAHLVLQALLESGSVPTNKQYITLIKGMCRVGNVKGALKLQDEMKALGVSSHNVAMSAIVRGLARSRKIANAIWVLDLMLEMQIVPTVATFTTLMYVYCKEANIAKALELRSIMEHCHVKLDVVSYNVLISGLCGNGDIEAAFKLYEEMKQRDLWPNTSIYIVLIDSLCVGNYHIESEKLLMDLQKRELMRLSRQFCYSSRSDIAVWSVLFSGSVHLQRFSLSLEHEEKVVHLSARIKSFGRQTPASDILV 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00943 1046 Pfam PPR repeat 605 634 IPR002885 -
Pste2g00943 1046 Pfam PPR repeat 709 731 IPR002885 -
Pste2g00943 1046 Pfam PPR repeat 885 911 IPR002885 -
Pste2g00943 1046 Pfam PPR repeat 288 318 IPR002885 -
Pste2g00943 1046 Gene3D Tetratricopeptide repeat domain 816 1014 IPR011990 GO:0005515
Pste2g00943 1046 Gene3D Tetratricopeptide repeat domain 386 527 IPR011990 GO:0005515
Pste2g00943 1046 Gene3D Tetratricopeptide repeat domain 528 590 IPR011990 GO:0005515
Pste2g00943 1046 Gene3D Tetratricopeptide repeat domain 306 385 IPR011990 GO:0005515
Pste2g00943 1046 Gene3D Tetratricopeptide repeat domain 591 667 IPR011990 GO:0005515
Pste2g00943 1046 Gene3D Tetratricopeptide repeat domain 668 815 IPR011990 GO:0005515
Pste2g00943 1046 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 215 IPR002885 -
Pste2g00943 1046 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 707 741 IPR002885 -
Pste2g00943 1046 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 530 848 - -
Pste2g00943 1046 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 637 671 IPR002885 -
Pste2g00943 1046 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Pste2g00943 1046 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
Pste2g00943 1046 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 143 177 IPR002885 -
Pste2g00943 1046 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 426 460 IPR002885 -
Pste2g00943 1046 Pfam PPR repeat 492 521 IPR002885 -
Pste2g00943 1046 Pfam PPR repeat 387 412 IPR002885 -
Pste2g00943 1046 Pfam PPR repeat 808 840 IPR002885 -
Pste2g00943 1046 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 602 636 IPR002885 -
Pste2g00943 1046 SUPERFAMILY HCP-like 467 638 - -
Pste2g00943 1046 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 285 IPR002885 -
Pste2g00943 1046 Coils Coil 970 990 - -
Pste2g00943 1046 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 777 811 IPR002885 -
Pste2g00943 1046 Gene3D Tetratricopeptide repeat domain 197 305 IPR011990 GO:0005515
Pste2g00943 1046 Gene3D Tetratricopeptide repeat domain 91 196 IPR011990 GO:0005515
Pste2g00943 1046 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Pste2g00943 1046 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 108 142 IPR002885 -
Pste2g00943 1046 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 531 565 IPR002885 -
Pste2g00943 1046 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 742 776 IPR002885 -
Pste2g00943 1046 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Pste2g00943 1046 NCBIfam pentatricopeptide repeat 218 251 IPR002885 -
Pste2g00943 1046 NCBIfam pentatricopeptide repeat 675 707 IPR002885 -
Pste2g00943 1046 NCBIfam pentatricopeptide repeat 780 812 IPR002885 -
Pste2g00943 1046 NCBIfam pentatricopeptide repeat 394 426 IPR002885 -
Pste2g00943 1046 NCBIfam pentatricopeptide repeat 533 566 IPR002885 -
Pste2g00943 1046 NCBIfam pentatricopeptide repeat 498 524 IPR002885 -
Pste2g00943 1046 NCBIfam pentatricopeptide repeat 745 778 IPR002885 -
Pste2g00943 1046 NCBIfam pentatricopeptide repeat 428 461 IPR002885 -
Pste2g00943 1046 NCBIfam pentatricopeptide repeat 919 949 IPR002885 -
Pste2g00943 1046 NCBIfam pentatricopeptide repeat 145 179 IPR002885 -
Pste2g00943 1046 NCBIfam pentatricopeptide repeat 254 287 IPR002885 -
Pste2g00943 1046 NCBIfam pentatricopeptide repeat 323 356 IPR002885 -
Pste2g00943 1046 NCBIfam pentatricopeptide repeat 463 496 IPR002885 -
Pste2g00943 1046 NCBIfam pentatricopeptide repeat 816 845 IPR002885 -
Pste2g00943 1046 NCBIfam pentatricopeptide repeat 605 638 IPR002885 -
Pste2g00943 1046 NCBIfam pentatricopeptide repeat 358 391 IPR002885 -
Pste2g00943 1046 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 566 600 IPR002885 -
Pste2g00943 1046 Pfam PPR repeat family 744 788 IPR002885 -
Pste2g00943 1046 Pfam PPR repeat family 636 685 IPR002885 -
Pste2g00943 1046 Pfam PPR repeat family 426 472 IPR002885 -
Pste2g00943 1046 Pfam PPR repeat family 531 579 IPR002885 -
Pste2g00943 1046 Pfam PPR repeat family 323 368 IPR002885 -
Pste2g00943 1046 Pfam PPR repeat family 142 190 IPR002885 -
Pste2g00943 1046 Pfam PPR repeat family 215 264 IPR002885 -
Pste2g00943 1046 Pfam PPR repeat family 917 964 IPR002885 -
Pste2g00943 1046 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Pste2g00943 1046 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Pste2g00943 1046 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 672 706 IPR002885 -
Pste2g00943 1046 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 812 846 IPR002885 -
Pste2g00943 1046 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 917 951 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00943 533 990 Glycosyltransferase AT1G05670 25.328 1.41e-46 177