Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00886 GAGAGAAAGAGGGAGAGATTTCACTAAAATACTAAAAGATTTTATGTTTTTGTTTTGCTGGCATCAAATCCATCACTGTCCATTTTGTACAGGTTTTGTAACCTTCTTTCAGTTCCGCATTTTTTTCCCTTTCTCCCTAGCCCTTTTTGTTGTTGGTGAAAGAGAGACCTTGAGAACAAAGTTCCCGTTTTCAAAATTGAAGCTTTTGGGTCTTTGAGGTTTGATCTCTGCTCAAGAGACTTTTTTTCTCATCTGGGTGTGTTGGTTTAGCTCTGCTGGCTCGACATGGCTGTGGAGAACCAAAGGGGTCATTTGGGTGATAAAGATGGGTCTGGTGACCCTTTTCCTGTGGGTATGCGTGTTTTGGCTGTGGATGATGACCCAATTTGCCTCAAGGTGTTGGAGACTCTACTTCGCAAATGCCAGTATCATGGTTCGTTGCTTTTAATTCTTTTGGTTAAATTTGTGGCTCTTGTTGCAGTTACTACAACTAATCAGGCAGTTGAAGCCCTGAAAATGTTGAGGGAAAACAGAAATAAGTTTGACCTCGTTATAAGCGATGTGAATATGCCTGACATGGATGGATTTAAGCTCCTTGAGTTGGTGGGACTTGAAATGGACCTACCTGTCATAAACAGTGATACAAAGCTGGTGATGAAGGGGGTTACACATGGTGCATGTGACTATTTGCTGAAACCTGTTCGAATTGAAGAGCTGAAGAACATATGGCAACATGTAGTCCGAAGAAGGAATTTTGATTGCAGGGATCAGAACAAGGCTTCCAATGAGGAGAAGGCTCCTAATATTGTTGGAGAAAGTAGTCAAGGCCTAAGATCAGAAAACAGTGCTGACCAGAGTAAAAGGCTTGGTAAAAAAAGGAAGGACCAAAGTGAGGAAGAAGAAGAAGATGGGGAAGGGAATGGAGATGATGAAGACCCCTCAGCACAGAAGAAACCTCGTGTAGTTTGGTCTGTTGAGCTGCATAGAAAATTTGTTGCTGCAGTTAATCAACTAGGCCTAGATAAGGCTGTTCCAAAGAAAATACTTGACCTGATGAATGTTGAAGGGCTTACAAGGGAAAATGTGGCTAGCCATCTACAGAAGTATAGACTCTATCTGAAAAAGGCAGCACAGCAAGCTAACATGGTTGCTGCGTTGGGTGGAAGTGATTCTTATCTACGTATGGGTTCAATTGACGGATATGGAGATTTTTGCACCTCATCTGCATCTGGAAGGATCTCAAACTCCACATTACCATCATATGCATCTAGTGGAATTTTCAGTAGGCTGAATTCCCCAGCTGGCTTGAACATGAGAGGAATCAGTACTTCTGCACTTATTCGGCCTGTTCAGTCCCAAAGCATCAACAGCTCCTTAAACACACTAGGAAACATTCAGCCATCTATATTTCCTACAAATCAAAGCTCAAGTTTATTACATGGCATTCCAACATCAATTGAGCTTAACCAATCTAAGCAAAGCAATAGTCCAACTGGAATATCTCAGTTAAACCAAGTTGATTTGAGTGGATTTACAGTTGCCTCTAGCTTCCCAGACAGTAGGGCTGCAGTTAATGGTCCGAATAATTCTCTACCATGTGTTCCTAATAATCATTTAATGTTACAAGGAAATCCACAGCAAACACATAGTCCAGGAGCATTTAGAAATCAGTCTTCTGTTAGAGTGGCTTCTTTGAGTGGAGAATCTTTTGACATGGGCATGTGTGGTCCTTCTAATTTGTTGGATTATAATCGGTGTAATGAAAACTGGCAAAATGCAGCTCAGTTGTCAAAATTTCCTGCCAATTCCTTGCCACTATGTGAACCTTTCAGCAATGACCAACTGCCTCCCACTAGCATCAATGCTTCCAACTCAAGTACTCCTATTGGCAACAGTCCGGTCGATTTTTCTTCTAGAACTAGAATGACAATTCCGGTTCCTTTGGACGATGCCAGAAACGAGCTGCGATGCCAAGAAGGCTTGATTGGGAATATTGTACAGCCTTCAAGCTACGCACCACAACAAAGGTGGGAAGAACATAAACTGGATTATAACCAAAACATGAGTCGTCCCTTCAATCCGGTAAATTCACACGCTTCTCATAGTGGTGTGACAAGTTCTATGGGTCATGGTTTAAACCAAAATAATACAATTTGTAGCAATAGATTTGATGCATCTTTGGTTGGCCAACTAAATGGACCATCTCCATCAATCAGCCGGTGCACTGAAGTTGAGAAATTTTCTTCAGACATTCGACTTAAGCAAAATGAAACCTACATTTTGGAGCAAATGAAGTCACAAGATGGATATATGCAGAATACTTTTGGGACCCTGGATGACATAATGGGTGCTATGGTCAAAAGGGAGCAAAATGAGTTGACATTGTTGGATGGAGAAATGGGATTTGATGCCTACCCTGTTGGATCATGCAACTGATTTCTTATTCAGCAAGAATCTAGAAGAATTAAATTCGTGAAACTTGCTCCTGTTTCTGGAGCCAATTGATTGTGAAGTTTCTTTGATGTACTTTTATGTTCTGGCGTTCTGCTACTAAATTTCTTTTCTTGGCCAACATTTTGTTGTTTCACTTATGGACTTTATTATTTAACCATCAGATCCATTCCATCTTTTTTTCAATCTTGTAGTGTAAATTCCACAAAAATTTC 2666 0.4077 MAVENQRGHLGDKDGSGDPFPVGMRVLAVDDDPICLKVLETLLRKCQYHGSLLLILLVKFVALVAVTTTNQAVEALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVINSDTKLVMKGVTHGACDYLLKPVRIEELKNIWQHVVRRRNFDCRDQNKASNEEKAPNIVGESSQGLRSENSADQSKRLGKKRKDQSEEEEEDGEGNGDDEDPSAQKKPRVVWSVELHRKFVAAVNQLGLDKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKKAAQQANMVAALGGSDSYLRMGSIDGYGDFCTSSASGRISNSTLPSYASSGIFSRLNSPAGLNMRGISTSALIRPVQSQSINSSLNTLGNIQPSIFPTNQSSSLLHGIPTSIELNQSKQSNSPTGISQLNQVDLSGFTVASSFPDSRAAVNGPNNSLPCVPNNHLMLQGNPQQTHSPGAFRNQSSVRVASLSGESFDMGMCGPSNLLDYNRCNENWQNAAQLSKFPANSLPLCEPFSNDQLPPTSINASNSSTPIGNSPVDFSSRTRMTIPVPLDDARNELRCQEGLIGNIVQPSSYAPQQRWEEHKLDYNQNMSRPFNPVNSHASHSGVTSSMGHGLNQNNTICSNRFDASLVGQLNGPSPSISRCTEVEKFSSDIRLKQNETYILEQMKSQDGYMQNTFGTLDDIMGAMVKREQNELTLLDGEMGFDAYPVGSCN 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00886 716 MobiDBLite consensus disorder prediction 524 543 - -
Pste2g00886 716 MobiDBLite consensus disorder prediction 168 188 - -
Pste2g00886 716 Pfam Response regulator receiver domain 26 146 IPR001789 GO:0000160
Pste2g00886 716 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 220 279 IPR017930 -
Pste2g00886 716 Pfam Myb-like DNA-binding domain 225 275 IPR001005 -
Pste2g00886 716 SUPERFAMILY Homeodomain-like 221 280 IPR009057 -
Pste2g00886 716 CDD REC_typeB_ARR-like 26 152 - -
Pste2g00886 716 Gene3D - 219 281 - -
Pste2g00886 716 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 393 IPR045279 GO:0009736
Pste2g00886 716 ProSiteProfiles Response regulatory domain profile. 25 152 IPR001789 GO:0000160
Pste2g00886 716 FunFam Two-component response regulator 219 282 - -
Pste2g00886 716 SMART REC_2 24 148 IPR001789 GO:0000160
Pste2g00886 716 MobiDBLite consensus disorder prediction 163 223 - -
Pste2g00886 716 PIRSF RR_ARR_type-B 1 716 IPR017053 GO:0003677|GO:0003700|GO:0009736
Pste2g00886 716 NCBIfam myb-like DNA-binding domain, SHAQKYF class 223 276 IPR006447 GO:0003677
Pste2g00886 716 SUPERFAMILY CheY-like 23 157 IPR011006 -
Pste2g00886 716 Gene3D - 23 172 - -
Pste2g00886 716 MobiDBLite consensus disorder prediction 189 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00886 Pste-Chr2 9517067 9522274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00886 18 471 Response Regulator Gene Family AT2G25180 48.822 6.31e-117 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pste2g00886 Response_reg 2.5e-13 CL0304