Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00868 ATGTCTCCTAAGCAGCTCAGTGATCCAAGCGAAAAACGACGCCCCCTATCATCGTTCCCAGTGGTGCAACCCTGCATAACCGTTTCTTCTTCTGTTCTTGTTTCGTCTCTGGTCGCTCGTGCCCAGAACATATGCAACTTTGACACGCGTTCTTTCGTTCTGCAGCGAAGAAACCTGAGAGAAATGGTGCGGCAGATTGCTATTCTTCTCGTATTCTTCCAAGAAATTCACGAACGTGGTTCGGTTCTCGCTCTCCCGGTTCGTCTCTGCTTCTCCGACATCCACGTCATCTTTCAGAAAATCAATTTTTTAATGCAGGATTGTTCTCTGGAAAGCGCACGCGTCTGGGTTTTATTGAAATCCGAATTCATCGTAACGCAGTTTCACGTTCTCATGCGGTCACTGGCAACGGTGCTGGAATTGTTACCCCTTTGCTTCGTAGACATAAGCGACGAAGTGAAAGAGCTGGTTGAGTTGGTGACGAAGCAAGCCCAGCGAGGGAAGGTAGAACTCGACGAAAACGATGAACGCGAAATGAAACGACTTCGTTTCATTCTGGATCAGCTCGAGAGAGGGGTTGAGCCAGACGGGGAAACCGTGAAATTGGTGCTCGACTACGTTGGGGTAAGAAGCTGGAGCGCGTGTAACAAAGAGATAAAATTTCTGGAAGATGAATTGGATTTCAATGATAAAGAGGGTGGTTTGCTGAATAGTTTAATAGGGTTGTTGTGTTACTCTAGAGTGGTTGTGTTTGAAACAATGGAGATTCAAGCTATTGCAAGAGAAGAACAAGGAGAAACAAAGTGCAATACAGAGACTTTAACTTGCGTAGTGCCGGAAGATTTTCTGTGTCCAATTTCGTTGGAGATCATGACCGACCCTGTGACGGTTTCCACTGGGCAAACCTACAACCGAGCCTCAATTCAGAAATGGTTGAAATCAGGAAACATGGTATGTCCAAAAACACGAGAGAAACTCACAAGCACGGAGCTTTTTCCCAACGCAGCGCTTAAAAAGCTTATCAAACAATTCTGCTCCGAAAACGGGATTGGGTTCAATCAGATCCAAACCAATCACACGGTGGTTAAGTTTACCGAAGCTGGTAGCCCCGGTGCGGCACACGCGATGCAGTTTTCAGCGTGGTTTCTGTCGAGGAAACTCGTGTTTGGAACGGAGGAGCAGAAAAACAAAGCGGCGTACGAGGTTCGTTTGCTGGCGAGGTCCAACGTTTTCAACAGGGCGTGTTTGGTAGAAATGGGAACGGTGGCGCCGCTGTTGGATCTTCTCACAACCGACGACAGAGTCACGCAAGAGAACGCAATCAGTGCTCTGGTGAAGCTCTCGAAGCATTCCAGCGGGCGCCAGGTCATCGCGGAGAGTAGAGGATTGGTGCCAATTCTCAATGTTCTGAAAAGAGGGCTTAGCCTGGAAGCTCGCCACGTGGCAGCTGCTATAATATTCTACCTCTCTTCGGAAAAAGAGTACCGGAAACTAATAGGGGAAAATCCGGAGGCCATTCCGGCGTTGGTGGAAATGGTGAGAGAAGGAACATCGAAAAACAACGCAGTGGTTGCAATTTTTGGTCTCCTTTTACGTCTTCAGAACCACGCCAAGGTGCTGGCGGCGGGTGCGGTTCCTGCGCTTGTTAATGTTTTGTCCTCTTCGGATAAACCTGATCTTGTGATGGATTCTTTAGCGGTTCTTGTCGCGTTGGTGGAAAGCGTGGAGGGGGCTTATGCTGTGTTCAGAGCTGAGGCCTTACCTTTGGTTGTTCGGATTTTGCAATCCGCTACGTCGCGCGCAGGGAAGGAGTACTGTGTGTCCATTTTGCTTGCCCTTTGTGTTAATGTTGGTGGTGTTCAAGTCACCGGTGTTCTGGCCAAGGATCCTTCGCTTATGCCTTCGCTTTATTCTCTTCTAACCGATGGTACTCCTCACGCCACCAAGAAAGCGCGTTCGCTCATCAACCTTCTACTAGACTTCTGA 1986 0.4859 MSPKQLSDPSEKRRPLSSFPVVQPCITVSSSVLVSSLVARAQNICNFDTRSFVLQRRNLREMVRQIAILLVFFQEIHERGSVLALPVRLCFSDIHVIFQKINFLMQDCSLESARVWVLLKSEFIVTQFHVLMRSLATVLELLPLCFVDISDEVKELVELVTKQAQRGKVELDENDEREMKRLRFILDQLERGVEPDGETVKLVLDYVGVRSWSACNKEIKFLEDELDFNDKEGGLLNSLIGLLCYSRVVVFETMEIQAIAREEQGETKCNTETLTCVVPEDFLCPISLEIMTDPVTVSTGQTYNRASIQKWLKSGNMVCPKTREKLTSTELFPNAALKKLIKQFCSENGIGFNQIQTNHTVVKFTEAGSPGAAHAMQFSAWFLSRKLVFGTEEQKNKAAYEVRLLARSNVFNRACLVEMGTVAPLLDLLTTDDRVTQENAISALVKLSKHSSGRQVIAESRGLVPILNVLKRGLSLEARHVAAAIIFYLSSEKEYRKLIGENPEAIPALVEMVREGTSKNNAVVAIFGLLLRLQNHAKVLAAGAVPALVNVLSSSDKPDLVMDSLAVLVALVESVEGAYAVFRAEALPLVVRILQSATSRAGKEYCVSILLALCVNVGGVQVTGVLAKDPSLMPSLYSLLTDGTPHATKKARSLINLLLDF 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00868 661 Pfam Armadillo/beta-catenin-like repeat 412 448 IPR000225 GO:0005515
Pste2g00868 661 PANTHER U BOX DOMAIN-CONTAINING 58 657 - -
Pste2g00868 661 SUPERFAMILY ARM repeat 390 658 IPR016024 -
Pste2g00868 661 Gene3D - 383 536 IPR011989 -
Pste2g00868 661 ProSiteProfiles U-box domain profile. 277 351 IPR003613 GO:0004842|GO:0016567
Pste2g00868 661 SMART Ubox_2 281 344 IPR003613 GO:0004842|GO:0016567
Pste2g00868 661 SUPERFAMILY RING/U-box 272 351 - -
Pste2g00868 661 Gene3D - 537 661 IPR011989 -
Pste2g00868 661 CDD RING-Ubox_PUB 279 331 IPR045210 -
Pste2g00868 661 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 420 462 IPR000225 GO:0005515
Pste2g00868 661 FunFam RING-type E3 ubiquitin transferase 357 661 - -
Pste2g00868 661 Pfam U-box domain 278 348 IPR003613 GO:0004842|GO:0016567
Pste2g00868 661 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 352 IPR013083 -
Pste2g00868 661 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 543 586 IPR000225 GO:0005515
Pste2g00868 661 FunFam RING-type E3 ubiquitin transferase 278 350 - -
Pste2g00868 661 SMART arm_5 450 491 IPR000225 GO:0005515
Pste2g00868 661 SMART arm_5 409 449 IPR000225 GO:0005515
Pste2g00868 661 SMART arm_5 532 573 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00868 Pste-Chr2 9344681 9346666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00868 14 661 U-box Gene Family AT1G10560 37.758 1.61e-150 450