Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00757 CGGAAAGTGAGGGTCCCGAGTGGGCACATGGTAGCGGCGTTGACGATGAAATGAGAAAGAGCACAAGACGTTTATGACAAAGCCTGCAATAGCTTTCGCGAATTTGGCAAAGAAGAGTGCCATTTGCGGCAAGGAAATTAAAGAACAATACAAGAGTGAAGAAAGGTATCAGGTATCAGGTATCAGCTATGGCTCGTGGAAAGATCCAGATCAAGAGGATAGAGAACACCACCAACCGCCAAGTCACTTACTCTAAACGACGGAATGGCCTTTTCAAGAAGGCCAACGAGCTCACTGTTCTCTGCGATGCCAAGGTTTCTATTATTATGTTCTCCAGTACTGGGAAACTCCACGAGTACATTAGCCCCTCCACCTCAACAAAGCAGTTCTTCGATCAATACCAGATGACTCTCGGGGTCGATCTCTGGAACTCTCATTATGAGAATATGCAAGACAACTTGAAGAAACTCAAAGATGTCAATAGGAATCTTCGCAAGGAGATTAGGCAGAGGATGGGAGATTGTCTGAACGATCTCACCATGGAAGATCTCAAGCTCCTTGAGGAAGAAATGGACAAGGCCGCCAAAGTTGTTCGTGAGCGTAAGTATAAGGTGATAACAAATCAGATTGACACCCAAAGGAAAAAGTTTAATAACGAGAAAGAAGTACACAACAGACTCCTGCGTGACTTGGATGCAAGAGCGGAAGATCCACGTTTTGCATTGATAGATAATGGAGGGGAGTACGAGTCTGTGATCGGATTCTCAAATTTAGGTCCACGCATGTTTGCCTTGAGCTTACAGCCAACCCATACTGGATCACCTGCTGATCTTACCACTTACCCCTTACTTTTCTAGTCCCCTCTCCCAATCACTAGACTAAATTTTCAATAAGTTATTTCTTATTATGTTCTGTTTCAAATATGCTGCTGTTTGTACTTAACCACAACTTCTCACCAACGCATGTGTGAAATATTCAATTGCTACTCACCAACCTTTTTTTTTTCTATATTCCTTTTATTCAGAAATA 1029 0.4286 MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSTSTKQFFDQYQMTLGVDLWNSHYENMQDNLKKLKDVNRNLRKEIRQRMGDCLNDLTMEDLKLLEEEMDKAAKVVRERKYKVITNQIDTQRKKFNNEKEVHNRLLRDLDARAEDPRFALIDNGGEYESVIGFSNLGPRMFALSLQPTHTGSPADLTTYPLLF 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00757 222 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pste2g00757 222 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 155 - -
Pste2g00757 222 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Pste2g00757 222 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pste2g00757 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pste2g00757 222 Coils Coil 151 171 - -
Pste2g00757 222 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Pste2g00757 222 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Pste2g00757 222 Coils Coil 114 134 - -
Pste2g00757 222 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste2g00757 222 Pfam K-box region 82 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste2g00757 222 Coils Coil 77 104 - -
Pste2g00757 222 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pste2g00757 222 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pste2g00757 222 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pste2g00757 222 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00757 Pste-Chr2 7934986 7938856 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00757 1 221 MADS-box Gene Family AT3G54340 54.545 7.35e-91 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pste2g00757 K-box 3.8e-19 No_clan