Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00727 TGTTGAGCGGGGCGGCGCGTGGAGAGATCAGTTCCCGCTCAGTAGCGCTTGGTTGAAAGAAGCTATCTTCTCCATTATTACGCGGCCGTAACCTAAATCAGTTCCATGCACTTCCATGTCTTCTTCTTCAACGCACCACCACACTTATAGCCGAAAGCAGAAATCTCTCGGCCTTCTCTGCACCAAGTTTCTAAGCTTATACAACAAAGGCGGCGTCCGATTCATCGGTCTCGACGATGCCGCTTCGCGATTAGGAGTCGAACGCCGCCGGATCTACGACATCGTTAATGTTCTCGAGAGCGTTGGGGTGCTCGCAAGAAAAGCTAAAAATCAGTATACTTGGAAAGGGTTTTCTGCGATTCCTGCTGCCTTGGAAGAACTCAAGGACGAGGGTTTGAAGGATAATCCTGGATCGTTTGATGATTCCAATGACAGTGCAAAAGTATCAGATGATGAGGACGAGGAAGAAACATTCCCCAATGTTAATATTGAAAGTCAGGAGGACAAGGCAAATAATCTTGATTCGACAACTCTCGTAAAATCCTCCAAGAATGAAAACAGAAGGGAAAAATCTTTGGCATTGCTTACTCAGAATTTTGTCAAGCTTTTTGTCTGCTCTAATATTGAAACGATCTCCCTTGACGAAGCTGCAAAATTGTTGCTGGGAAATTCAATAATAAGAACAAAAGTTAGACGTCTATATGATATTGCGAATGTGTTATCCTCCATGAACTTAATCGAGAAGACCCATACAAAAAACACAAGAAAACCCGCATTCAGGTGGTTGGGTTTGAGAGGGAGAACATGGAATGAATCAGTTGACTTGGCTCACAATTCAAATGTCAAAGAGTCACGGAAAAGGATGTTTGGGACTGACATCACAAATATAAGCTTTAAAAGAAACAAAGTTGATTTGTCCATTGATGGACAGAGCCCTAAAATGCAAAACCAAGAGGAGAATATTAGTCCTAGAGCTCAGCCAGAGATAAGGAAGTTAAAAAAAGATGCAAAACAGACTTCAAAGAACTATCAGTTTGGCCCTTTTGCTCCAAATAATGTGCCCACAGTTGTATCATCTGAAAATAATACTGCAAAACCCGTGCATGATTGGGACAGCCTTGCTCAGGTGCATCGTCCTCAATATCAAAATCAAGCTTTGAAAGATTTGTTCTCTCACTATATGGAAGCATGGAAATCTTGGAACTCTGAAGCTGCTGGGAAAAAGTCAAGGAAAACTAAATGATTATAGCTTCCCTAAAAATAAATGATCCGTTACTGAATGCATATTGTGTTATATTCTAAAAAAGTATCAATGGTTAATGCATGTTCTCCATGCATTAATTATCAAAAGGAAATGATCAATTTTTGAATGTATGTTAGTCGTGCGGTAGTGTATTAAAACATAATCCAGTAATGAATGCATGTCCTGCATGTGTATATTATTTATCATTTTTATTATAACTATTAATTTATATAAATTTATTGGTTGTTAAATGCTTGCATTAGGTGTATAA 1514 0.3937 MSSSSTHHHTYSRKQKSLGLLCTKFLSLYNKGGVRFIGLDDAASRLGVERRRIYDIVNVLESVGVLARKAKNQYTWKGFSAIPAALEELKDEGLKDNPGSFDDSNDSAKVSDDEDEEETFPNVNIESQEDKANNLDSTTLVKSSKNENRREKSLALLTQNFVKLFVCSNIETISLDEAAKLLLGNSIIRTKVRRLYDIANVLSSMNLIEKTHTKNTRKPAFRWLGLRGRTWNESVDLAHNSNVKESRKRMFGTDITNISFKRNKVDLSIDGQSPKMQNQEENISPRAQPEIRKLKKDAKQTSKNYQFGPFAPNNVPTVVSSENNTAKPVHDWDSLAQVHRPQYQNQALKDLFSHYMEAWKSWNSEAAGKKSRKTK 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00727 375 SMART E2F_TDP_2 13 78 IPR003316 GO:0005667|GO:0006355
Pste2g00727 375 SMART E2F_TDP_2 149 225 IPR003316 GO:0005667|GO:0006355
Pste2g00727 375 FunFam E2F transcription factor 8 8 80 - -
Pste2g00727 375 PANTHER TRANSCRIPTION FACTOR E2F 6 344 IPR015633 GO:0000978|GO:0006357
Pste2g00727 375 Gene3D - 143 227 IPR036388 -
Pste2g00727 375 Gene3D - 8 80 IPR036388 -
Pste2g00727 375 SUPERFAMILY "Winged helix" DNA-binding domain 12 76 IPR036390 -
Pste2g00727 375 FunFam E2F transcription factor-like E2FE 144 227 - -
Pste2g00727 375 SUPERFAMILY "Winged helix" DNA-binding domain 148 214 IPR036390 -
Pste2g00727 375 MobiDBLite consensus disorder prediction 93 128 - -
Pste2g00727 375 MobiDBLite consensus disorder prediction 108 123 - -
Pste2g00727 375 Pfam E2F/DP family winged-helix DNA-binding domain 14 78 IPR003316 GO:0005667|GO:0006355
Pste2g00727 375 Pfam E2F/DP family winged-helix DNA-binding domain 151 225 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00727 Pste-Chr2 7640073 7650643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00727 8 366 E2F-DP Transcription Factor Family AT3G48160 54.620 1.31e-121 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pste2g00727 E2F_TDP 7.5e-21 CL0123