Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00709 ATGGGAGGCAAAGGCAAACACAGGTGGAAAATCGGCTTCCACCGGTCCTTCAAGCGGCTGGACCCAACCAAAAACCCTCCCAAGGAGTTCACCTGCCCGATTACCGGGTCATTAATGTCCGACCCGGTTGTTGTTGCGTCCGGTCAAACCTTCGAACGCGTTGCTGTGCAGGTCTGCAACGACCTCAACTGCACTCCGGAGCTCCACGACGGGACCCGACCCGATTTCTCAACTGTTATCCCTAATCTCGCCATCAAAACCACCATCCTCCACTGGTGCCAGAAGAACCGCGCCGAACACCCGCGCGCACCGGATTACGCCTCCATCGAGCGCCACGTCAGAGAAACAATGGTGGAAAAGCAACAACAAGAAGAACGAATTAGGGTTTCGGAAAAGGAGCTTCTCAACGCGGTGGCGGATAATCCTCCGGTGCTGTTCTCGCACGCCGCCACCGAGTTAGGTCCACGAGTGAACCACTTCAACTCCGGATCGTCGTCGGAAGAGTCCGTGGTAATCACGACGAGCCCGGAAACGCCGTTACCGTTAACGATTCGACCGACTTGCTTCTCCTCCTCCTCTTCCTCTTGCGAGATCGAAGTAGAAAACCCTAATTCGGAGGAAGAAGAAGGAATATTGAGGAAATTGAAAAGCGGCGAGGTGCATGAGCAAGAAGAAGGTGTAATCGCGCTGAGGAAGATAACGAGGAACAAAGAGGAGGCTAGGGTTTCGCTGTGCAGCACGCGAGTTTTGAACGCGCTGAAGGGTTTAATCGCGTCGCGATACGGCGTCGTTCAGGTCAACGCGGTGGCGTGCGTGGTCAACCTTTCGCTGGAGAAGAATAACAAAGTGAAGATAGTGAGGTTAGGGTTTGTTCCGTTTTTAATCGATGTGTTGAAGGGGGGATTGGGTGAGTCGCAGGAGCACGCTGCGGGCGCGCTTTTTAGTTTATCGTTGGATGATGATAACAAAATGGCGATTGGCGTTCTCGGCGCGTTGCAGCCGTTGATGCACGCGCTGAGGGCCGAGTCCGAGCGGGCTCGCCACGACTCGGCGCTGGCGCTGTATCATTTGAGTCTGGTCCAGAGCAACCGGGTTAAGTTGGTGAAACTCGGTGCGGTTCCGACGCTTCTTTCGATGGCGGCGGCGGGGGGGAACTTGGCGAGCCGGGTGCTGCTGATTCTGTGCAACTTGGCGGTGTGCACGGAGGGGCGCGCGGCGATGCTGGACGCGAACGCGGTGGAGTGTTTGGTGGGGCTGCTGCGGGGGAACGAGTTAGACTCGGAGGCGACTCGGGAGAATTGCGTGGCGGCGTTGTACGCGTTGAGTCATCGGAGCTTGAGGTTTAAAGGGTTGGCTAAAGAAGCGAGGGTGGTGGAGGTTTTGAAGATGGTTGAGGAAACGGGAACCGATAGGGCTAGGGAGAAAGCTAGAAAGGTTTTGCAGATGTTGAGAAGTGTGGGAAATGAGGGCAATGAAGCTGACGAGTTGTACGAGTCCGCCGGGTTGACTCCGAATCGCTACCGAGTTGGTGCCGCGAGGAGCAACAACAACCTGGTCAACACGACATCGTTCTAG 1575 0.5594 MGGKGKHRWKIGFHRSFKRLDPTKNPPKEFTCPITGSLMSDPVVVASGQTFERVAVQVCNDLNCTPELHDGTRPDFSTVIPNLAIKTTILHWCQKNRAEHPRAPDYASIERHVRETMVEKQQQEERIRVSEKELLNAVADNPPVLFSHAATELGPRVNHFNSGSSSEESVVITTSPETPLPLTIRPTCFSSSSSSCEIEVENPNSEEEEGILRKLKSGEVHEQEEGVIALRKITRNKEEARVSLCSTRVLNALKGLIASRYGVVQVNAVACVVNLSLEKNNKVKIVRLGFVPFLIDVLKGGLGESQEHAAGALFSLSLDDDNKMAIGVLGALQPLMHALRAESERARHDSALALYHLSLVQSNRVKLVKLGAVPTLLSMAAAGGNLASRVLLILCNLAVCTEGRAAMLDANAVECLVGLLRGNELDSEATRENCVAALYALSHRSLRFKGLAKEARVVEVLKMVEETGTDRAREKARKVLQMLRSVGNEGNEADELYESAGLTPNRYRVGAARSNNNLVNTTSF 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00709 524 FunFam RING-type E3 ubiquitin transferase 11 100 - -
Pste2g00709 524 SMART arm_5 400 443 IPR000225 GO:0005515
Pste2g00709 524 SMART arm_5 319 359 IPR000225 GO:0005515
Pste2g00709 524 SMART arm_5 278 318 IPR000225 GO:0005515
Pste2g00709 524 Pfam U-box domain 27 97 IPR003613 GO:0004842|GO:0016567
Pste2g00709 524 SMART Ubox_2 29 92 IPR003613 GO:0004842|GO:0016567
Pste2g00709 524 Coils Coil 106 140 - -
Pste2g00709 524 Gene3D - 202 384 IPR011989 -
Pste2g00709 524 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 125 IPR013083 -
Pste2g00709 524 Gene3D - 385 491 IPR011989 -
Pste2g00709 524 FunFam RING-type E3 ubiquitin transferase 206 483 - -
Pste2g00709 524 ProSiteProfiles U-box domain profile. 25 99 IPR003613 GO:0004842|GO:0016567
Pste2g00709 524 SUPERFAMILY ARM repeat 211 483 IPR016024 -
Pste2g00709 524 PANTHER U BOX DOMAIN-CONTAINING 26 484 - -
Pste2g00709 524 SUPERFAMILY RING/U-box 23 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00709 Pste-Chr2 7405541 7407115 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00709 26 511 U-box Gene Family AT5G65200 57.946 0.0 553