Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00681 TTGAGTCAAAGATACGAAAGGAATAATGTCAAGTCTAACACAAGCAAGATCGAAATAGCTCCTGGTACGATCCAAACAGCTTATCTTCCCCCTCCAGTTCAAACCGAGCCTAGCCCAAGAGGAAAGCAAAATTCTAAATCAAAAGTTTCAAGAAATGCAAAGTCTGGAACTCACAAACCAAGTGCAGATTACCCTAGTTCGATTGCAGTTAACAACTGCCGTTATGACAGTTCTTTAGGACTGTTAACGAAGAAATTTGTTAGCTTGATCCAGGATGCTAAGGACGGCACCCTAGATCTAAATAAAACCGCTGAGATCTTGGAGGTACAGAAAAGAAGAATTTATGATATTACAAATGTTCTTGAAGGAGTAGGATTGATAGAGAAAACTTCAAAGAATCATATACAGTGGAAGGGATGCGATGGACTTGGGCCACGAGAACTAGAAGACCAAGTTAACAGTCTAAAGGCTGAAGTTGAAAGTCTATATGCCGAGGAATGCGAACTTGATGATTGTATAAGGAAAAAGCAGGAACTTATAAGAAACATGGAGGAAAGGGAAAGCTCTCAAAAGTACCTGTTTTTTAGCAAGGAAGATATTCTCAGTCTTCCATGCTTCCAGAATCAAGAAATTATTGCAATCAAGGCTCCAAAAGCTAGTTTCATCGAGGTCCCTGATCCTGATGAGGAATTAGGTTTCCGGCAAAAGCAGTATAAAATGATTGTTAGAAGTGCTACTGGACCAATATCTTTGTACCTCTTGAGCAATGATGACCGCAAGTTTGAGGATGATAGTGTCAAAAGGGTGAAAATAATGGATCCATCATGGAACAATGATCACCACAGAAAGAAGGGTGTGGGACTATTAGAAAGCCAAGGTGATAAAAAAAATCATTCTGAGAGTTTCAGTTTGCATGGGTCACAAGCATTTGGAATTCAAAAAATTACTCCCTCGGACTTTGAAATGGAAGATGACTATTGGTTTCAATCAGAGTCTGGAGTGAGCCTAACAGAATTGTGGAGTAGCAATATCTTCTAAACTAATCCTCATCTGGATGCAACTATGCAAAGTGACCAATTTAAAGCTCATATTAATGAATGCTCTTTTTGTTCGATAGATGAACTTCAAGAAGATTAATCCAACAAAGAGTCTATGGATTTGCCAAAACAGAAGATTCACTAACAGATACTATCAATAAGTAAGAGACACTATTAATTGTTCCATATGACACAAAGGGTACATTCAAGCTGTACATTGTATCTCTTTTTTCTTTTTTTCTCTTTCTATCAACAGTTGCCTTAGCTAGGATACTTGTGTCCTAGTTCTACACTTG 1333 0.3811 LSQRYERNNVKSNTSKIEIAPGTIQTAYLPPPVQTEPSPRGKQNSKSKVSRNAKSGTHKPSADYPSSIAVNNCRYDSSLGLLTKKFVSLIQDAKDGTLDLNKTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIQWKGCDGLGPRELEDQVNSLKAEVESLYAEECELDDCIRKKQELIRNMEERESSQKYLFFSKEDILSLPCFQNQEIIAIKAPKASFIEVPDPDEELGFRQKQYKMIVRSATGPISLYLLSNDDRKFEDDSVKRVKIMDPSWNNDHHRKKGVGLLESQGDKKNHSESFSLHGSQAFGIQKITPSDFEMEDDYWFQSESGVSLTELWSSNIF 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00681 345 CDD E2F_DD 150 257 IPR032198 GO:0046983
Pste2g00681 345 MobiDBLite consensus disorder prediction 38 67 - -
Pste2g00681 345 SUPERFAMILY "Winged helix" DNA-binding domain 74 137 IPR036390 -
Pste2g00681 345 Pfam E2F transcription factor CC-MB domain 155 254 IPR032198 GO:0046983
Pste2g00681 345 SUPERFAMILY E2F-DP heterodimerization region 150 257 IPR037241 -
Pste2g00681 345 SMART E2F_TDP_2 74 139 IPR003316 GO:0005667|GO:0006355
Pste2g00681 345 Gene3D - 69 141 IPR036388 -
Pste2g00681 345 PANTHER TRANSCRIPTION FACTOR E2F 27 340 IPR015633 GO:0000978|GO:0006357
Pste2g00681 345 MobiDBLite consensus disorder prediction 1 21 - -
Pste2g00681 345 FunFam E2F transcription factor 1 68 141 - -
Pste2g00681 345 Pfam E2F/DP family winged-helix DNA-binding domain 76 139 IPR003316 GO:0005667|GO:0006355
Pste2g00681 345 Gene3D - 146 257 - -
Pste2g00681 345 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00681 Pste-Chr2 7109741 7112918 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00681 72 341 E2F-DP Transcription Factor Family AT1G47870 54.815 1.62e-93 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pste2g00681 E2F_CC-MB 7.8e-26 No_clan