LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste2g00638	AAAAAAAGGAAAAGGGAAATTGGTGATTCATCCATTCAAGTGCGTGTCCGAAAGAGGCGGCAACAGAACGCCAGACACGGCGTTAACAAAACCGTGAAATAGGAGAGAGCAAAAAAGCGCAACCGCGAAACGGTGCGTAGCGGTTTCGACACCCTCCGTTTCCCAGTTGTAGCGAAACCCGACACCCCACCTGAAGGAGAGAGAAAGAGAGTGGTCAATAGCAGTCAAAGACACATATACCCCGACACAGCAGACCTTACTCTCTCCATCGAGTGGTGTCTATAAAAAACTGAGAACGAAAATGATGAAGAATTGAAGATTCGTTCCGCAAAGGAATCCTAGAGTGAGCGAAAGAGATGATGGAAGAGACGCAACACCGAGTCACTGACTCGTCGCGCTCTTCCGATGGAGCGCCTCCTGACTCGGAAACCCTAGTTCTTCGCTCTTGTTCGGCTCCGCAAGAGCACCATGCTCTTGATGCAACAGATGTACAGGGAAACACTGTCACATGCAAGGGTGAAAAAGCTGAGAATAAGGAGTCAGCTCAGCTTCCTGACAACAAGGAAAGTATTGTTAAAGATGCAGTTGAGGCACCCCAAAAACAAACAGAAAATCAACTTCAGGTGTCTGTTTGTTCAACTTCAGGACCTGAACTGTCACCAACTTGTGTTTCACAGTCTTTATCATCTGCCCCTAGTCCAACTGTACTAGAACAGAGGTCGTCTCCTCCCAAGGCTAATAGTGTACAAGCACCAAAAATATTCAAAAGCACTACTGATGGTACAACCTTATCTTCTGTTTCTGTTTCACGGGCATCTGCATCTGATGGATATAACTGGCGGAAGTATGGTCAGAAGCAAGTGAAGAGTCCTATGGGTTCTCGAAGCTATTACAGGTGTACTCATTCAAATTGTAGTGCTAAGAAGATTAAATTTTGTGACCATTCAGGAAATGTGATAGAGATTGTCTATAAAAGTCAACATAGTCATGATCCCCTGCATAAAATTGATACCACTAAGGAAAGTATGTTCCTGCCTTCCAGTGAACCTAAAGTTGAAAACAGTATTCCAAAACAATCTATCAAAGTTGTGAATGATTCTGATCCATCACCTTCTCCAAAAGAACCTTTACAAGAAGCTCCTTGCAGTGCCCATAAGAATCTAGAAAACCCATCTAATGGTGAAAATGGTAAAGTTATTGTGAAGGAAGAGAACATTAATGATCCTGAGCCAAAAAGAAGGCAAGTTGCATGTGAATTCATTATCTTCATAGGAAAATTGAATGAAGGTGATTTAAGATGCATGGATTCAGCGGTAAAACCTGGGAAGAAACAAAAGTTTGTTGTGCATGCAGCAGATGATATGGGTATATCTGGTGATGGATACCGATGGCGAAAGTATGGACAAAAACTGGTGAAGGGAAATCCTCATTTCAGAAACTATTACAGATGCACTTCTGCCGGATGTCCTGTTCGAAAGCACATTGAAACATCTGTTGATAACTCAAAGGCTCTTATCATAACATACAAAGGAGTTCATGATCATGATATGCCTGTGCCCAAGAAACGACATAGTGTTCCAAGTGCTTCACTTGTGGCTGATGCAACACCTACTTCAATGAACAATTTGCAGTCCCAAAAAACTGACTTGCTCCAAAATCAGGAAACTTCTGCCCAATGCTCGGAAGACACAGAAGAAGAATTAACAGGAGAAGCATTGGATCTTGGAGGTGAGAAAGCAATTGAGTCAGCTCGAACTCTTCTGAGCATAGGCTTTGAAATTAAACCTTGTTGATTGAATATATTTTTCAGAAATATGTACTTGTTCTGTATAAATTAGTTGAAAGTTTCTCATCCAATTTTGGTGGAGTCTCC	1873	0.4212	MMEETQHRVTDSSRSSDGAPPDSETLVLRSCSAPQEHHALDATDVQGNTVTCKGEKAENKESAQLPDNKESIVKDAVEAPQKQTENQLQVSVCSTSGPELSPTCVSQSLSSAPSPTVLEQRSSPPKANSVQAPKIFKSTTDGTTLSSVSVSRASASDGYNWRKYGQKQVKSPMGSRSYYRCTHSNCSAKKIKFCDHSGNVIEIVYKSQHSHDPLHKIDTTKESMFLPSSEPKVENSIPKQSIKVVNDSDPSPSPKEPLQEAPCSAHKNLENPSNGENGKVIVKEENINDPEPKRRQVACEFIIFIGKLNEGDLRCMDSAVKPGKKQKFVVHAADDMGISGDGYRWRKYGQKLVKGNPHFRNYYRCTSAGCPVRKHIETSVDNSKALIITYKGVHDHDMPVPKKRHSVPSASLVADATPTSMNNLQSQKTDLLQNQETSAQCSEDTEEELTGEALDLGGEKAIESARTLLSIGFEIKPC	478

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste2g00638	478	ProSiteProfiles	WRKY domain profile.	150	214	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste2g00638	478	MobiDBLite	consensus disorder prediction	226	279	-	-
	Pste2g00638	478	MobiDBLite	consensus disorder prediction	80	130	-	-
	Pste2g00638	478	SMART	WRKY_cls	339	398	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste2g00638	478	SMART	WRKY_cls	155	213	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste2g00638	478	Gene3D	WRKY domain	324	400	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pste2g00638	478	Gene3D	WRKY domain	141	214	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pste2g00638	478	ProSiteProfiles	WRKY domain profile.	334	399	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste2g00638	478	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	97	429	IPR044810	GO:0003700
	Pste2g00638	478	Pfam	WRKY DNA -binding domain	341	396	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste2g00638	478	Pfam	WRKY DNA -binding domain	157	211	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste2g00638	478	SUPERFAMILY	WRKY DNA-binding domain	333	399	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pste2g00638	478	SUPERFAMILY	WRKY DNA-binding domain	153	213	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pste2g00638	478	MobiDBLite	consensus disorder prediction	226	248	-	-
	Pste2g00638	478	MobiDBLite	consensus disorder prediction	55	76	-	-
	Pste2g00638	478	FunFam	WRKY transcription factor	324	400	-	-
	Pste2g00638	478	MobiDBLite	consensus disorder prediction	1	25	-	-
	Pste2g00638	478	MobiDBLite	consensus disorder prediction	55	130	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste2g00638	Pste-Chr2	6382661	6391262	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste2g00638	86	478	WRKY Transcription Factor Family	AT4G30935	51.263	7.85e-118	352

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Pste2g00638		WRKY	1.1e-22	CL0274