Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00618 TTAATGGTGTGTGCAATGTTGAAGCATGTTCAGCGAAAAGGCATCATCACCATTGCTCTCACCCACCCTTCCTCAGTGTTATTCTCCACATCAACCTCTGATGCAAACGCCATCATCCACATTCTGGCCTCTTCCAACACCTTCGCCCAAGCCACATTCCTCACCAAACAGCACCTCCAAAACTCGCGCAAACCCCGCTCTCTCTGTTCCTCCCTCTTCCAATCTCTCTCCCGCGCCAACCTGACGCCCCGCGCGTTCGGCGCTCTCTTACTTGCTTTCTGCCAACTGGGTCTCGTCCAAGAAGCTCTCTGGGTCTTCAAAAACCATTCCTTTTTGCCTCCGTTGCAACCTTGTAATGCGCTTCTTCATCGCCTGGTTAAGACCCACATGCTTGATTCGGTGTGGGAGGTGTACGGGGACATGGTGTCGCGCGGGTTTTCCCCCACCGTCATCACCTACGGCATTTTGATGAACTGTTGCTGCGTCCGGGGTGATTTTAGCAACGCGCGTAGGGTGTTTGATGAAATGCTTGAGAGAGGGATTGAGCCTAATGTTGTGGTTTACACTATTCTCATTCGCGTGTTTTGTAGTGAAGGTCTAATGGAAGAAGCGGAGGGAGTGTTTGGACGGATGAGGGAATCTGGGGTGGTGGCGCCCAATTTGTACACTTATAAGACCCTCATGGATGGGTATAGCAAGATGGGTGATGTGAAACGTGTTTTTGACTTGTATTGTGATATGCTTAAGCGTGGCTTGCACCCTGATGTTGTTACTTTTGCTACTTTGGTAGATGTTCTCTGCAAGGTGGGGTATTTGAAGGCTGCCCAAAACTGTTTTGGTTACATGGCCAAGTTTGCTGTTGTTCCTAATGCACATGCTTATAATTCTTTGATTGACGGGTATTGTAAGGTGGGTAACTTGCCTAAAGCAATGTGTTTGTGGATGGAAATGGAAAGGTGTGGAATCTTCCCGGATGTTTTTACATACAATATACTCATCAAGGGTCTGTGTGACGCAGGTAGATTGGAAGAAGCTACGGATTTGCTGGAGAAAATGGATGAAGTTGGGGTGCTTGCCAATTGTGTGACATACAATGCAGTGATTGATGGGTACTGTAAAACAGGTGACATGGAGAACGCTATTGAGGTGTGTTCCCAAATGACTGAAAGGAAAATTGAACCTGATGTAATCACATTTTCGATATTGATTGATGGATTTTGCAAGAAAGGTGATGTAAAAGCTGCAATGGGCTTGTACACGGAAATGGTAATCAAGGGTGTTGCACCTGACGTGGTAACTTACACAGCGTTGATTGATGGGCACTATAAGGTTGGGAAGATCAAAGAGGCTTTCAGGTTGCACAGGGAGATGCTGGAAGCAGGACTGACTCCCAATGTGTTCACAGTTAGTTGTGTAATTGATGGCCTTTTGAAAGATGGAAGGATGAATGGTGCAATCAATCTGTTCTTGGAGAAAACTGGCACTGCTTGCCCTAGTGATAAAATGGATAGCAGCCTTTGTTCTCCAAACAGTGTGATGTATGCCATTTTAATTCAAGGATTATGTAAAGATGGAAGGATCTTTAAGGCCACCAAGTTTTTTGCGGAAATGAGATGGAATGGTTTCATGCCAGACATGCTAGTGTATGTTACCATGTTGCAGGCACATTTTCGGTCCAAGCATATGGTTGATGTAATGATGCTGCATGCAGATATGCTGAAGATGGGTGTTATGCGGAATACTTCCATATATGGTGTATTGTCCAGGGGCTACCGAGAGAATGAATACTTGAAATCAGCTCATATACACAAGATTCAAATAAGAGATAGCACAGCAGCTAATGGAAGCAGGACTGAACCTGTGACATTCATGACACAATTGAAATGGTTCAACACTTTGCTTCGAAGCAGTATGAACAAGTTGGTTCATCTTTCCATGTCCACGTGGAATCACCCCATTAGCCTCAAACCACCAAAGCCCAACCAAACCCTTAAGAAGCACCTTGAATGCAACAGCCACACCAAAGTGCTTATACTTTTCAGATCCTTCTTAAGAAAAAGACCCTCTCTCACCCTCATTGACAGTTTTTCTCTGCTCTATGCCCTCAAAGCCTGCAACCACAAACACCCCTCCACCCAAAGGAAACAACTTCATGCCCTCATCATAAAACTTGGGTTCCAAGCCATAGTTCAACTCCAGACATCCCTTTTGAAAACGTATGCCCAATGTGGAAACCTGCGTGATGCACACCAATTGTTCGATGAAATACCCTCAAAGAACATCATTTGTTGGACATCGTTGATTTCTGCCTATGTTGACAACCATAAGCCTGGGAAAGCTTTGCAGTTGTTTACAGAGATGCATATGAACAATGTGGAACCTGATCATGTAACTCTGACCGTTGCTCTCTCTGCCTGTGCTGAGACTGGGACACTTGAAATGGGGTTGGTTGAGGAAGGGAAGCGGCACTTCAGAAGTATGAGTGAGGTTTATGGTATAGAGCCTAGAGAGGCTCACTTTGGCTGCATGGTGGATCTTTTATGCAGAGGGGGGAATCTGAGAGATGCCTATGACTTCATTATGGAGATGCCGGTGCTGTCGAACGCAGTTGTTTGGCGAACCTTGCTGGGAGCATGCAGTGTCCATGGTGAATTGGAGCTAGCTGCAGAAGTGAGGCACAAACTACAGAAGTTGGATCCTGGATATGTGGGTGACAGTGTTGTTATGTCTAATATTTATGCAAATAAAGGCATGTGGAATAAGAAGATAACTGTTAGGAATCAGATAAAAAAGTCAAGAGCTCCTGGTTGTAGCTCAATTGAGGTGGGAAGTGGGGTTTGTGAATTTGTGACTGTAGATGATGAACATCCTCCAATGACAGATAAGTGA 2889 0.4524 LMVCAMLKHVQRKGIITIALTHPSSVLFSTSTSDANAIIHILASSNTFAQATFLTKQHLQNSRKPRSLCSSLFQSLSRANLTPRAFGALLLAFCQLGLVQEALWVFKNHSFLPPLQPCNALLHRLVKTHMLDSVWEVYGDMVSRGFSPTVITYGILMNCCCVRGDFSNARRVFDEMLERGIEPNVVVYTILIRVFCSEGLMEEAEGVFGRMRESGVVAPNLYTYKTLMDGYSKMGDVKRVFDLYCDMLKRGLHPDVVTFATLVDVLCKVGYLKAAQNCFGYMAKFAVVPNAHAYNSLIDGYCKVGNLPKAMCLWMEMERCGIFPDVFTYNILIKGLCDAGRLEEATDLLEKMDEVGVLANCVTYNAVIDGYCKTGDMENAIEVCSQMTERKIEPDVITFSILIDGFCKKGDVKAAMGLYTEMVIKGVAPDVVTYTALIDGHYKVGKIKEAFRLHREMLEAGLTPNVFTVSCVIDGLLKDGRMNGAINLFLEKTGTACPSDKMDSSLCSPNSVMYAILIQGLCKDGRIFKATKFFAEMRWNGFMPDMLVYVTMLQAHFRSKHMVDVMMLHADMLKMGVMRNTSIYGVLSRGYRENEYLKSAHIHKIQIRDSTAANGSRTEPVTFMTQLKWFNTLLRSSMNKLVHLSMSTWNHPISLKPPKPNQTLKKHLECNSHTKVLILFRSFLRKRPSLTLIDSFSLLYALKACNHKHPSTQRKQLHALIIKLGFQAIVQLQTSLLKTYAQCGNLRDAHQLFDEIPSKNIICWTSLISAYVDNHKPGKALQLFTEMHMNNVEPDHVTLTVALSACAETGTLEMGLVEEGKRHFRSMSEVYGIEPREAHFGCMVDLLCRGGNLRDAYDFIMEMPVLSNAVVWRTLLGACSVHGELELAAEVRHKLQKLDPGYVGDSVVMSNIYANKGMWNKKITVRNQIKKSRAPGCSSIEVGSGVCEFVTVDDEHPPMTDK 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00618 962 Gene3D Tetratricopeptide repeat domain 354 424 IPR011990 GO:0005515
Pste2g00618 962 Gene3D Tetratricopeptide repeat domain 283 353 IPR011990 GO:0005515
Pste2g00618 962 Gene3D Tetratricopeptide repeat domain 425 495 IPR011990 GO:0005515
Pste2g00618 962 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Pste2g00618 962 Gene3D Tetratricopeptide repeat domain 24 167 IPR011990 GO:0005515
Pste2g00618 962 Gene3D Tetratricopeptide repeat domain 659 814 IPR011990 GO:0005515
Pste2g00618 962 Gene3D Tetratricopeptide repeat domain 815 948 IPR011990 GO:0005515
Pste2g00618 962 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Pste2g00618 962 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 510 544 IPR002885 -
Pste2g00618 962 FunFam Pentatricopeptide repeat-containing protein At5g39710 378 484 - -
Pste2g00618 962 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 760 794 IPR002885 -
Pste2g00618 962 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 289 IPR002885 -
Pste2g00618 962 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 325 359 IPR002885 -
Pste2g00618 962 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 430 464 IPR002885 -
Pste2g00618 962 Pfam E motif 882 941 IPR046848 -
Pste2g00618 962 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 290 324 IPR002885 -
Pste2g00618 962 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 395 429 IPR002885 -
Pste2g00618 962 Gene3D Tetratricopeptide repeat domain 499 650 IPR011990 GO:0005515
Pste2g00618 962 Gene3D Tetratricopeptide repeat domain 168 282 IPR011990 GO:0005515
Pste2g00618 962 Pfam PPR repeat 507 538 IPR002885 -
Pste2g00618 962 FunFam Pentatricopeptide repeat-containing protein At2g34400 718 962 - -
Pste2g00618 962 SUPERFAMILY HCP-like 158 461 - -
Pste2g00618 962 Pfam PPR repeat 840 863 IPR002885 -
Pste2g00618 962 Pfam PPR repeat 548 577 IPR002885 -
Pste2g00618 962 Pfam PPR repeat 86 107 IPR002885 -
Pste2g00618 962 Pfam PPR repeat 118 146 IPR002885 -
Pste2g00618 962 NCBIfam pentatricopeptide repeat 118 150 IPR002885 -
Pste2g00618 962 NCBIfam pentatricopeptide repeat 397 431 IPR002885 -
Pste2g00618 962 NCBIfam pentatricopeptide repeat 327 360 IPR002885 -
Pste2g00618 962 NCBIfam pentatricopeptide repeat 762 795 IPR002885 -
Pste2g00618 962 NCBIfam pentatricopeptide repeat 432 466 IPR002885 -
Pste2g00618 962 NCBIfam pentatricopeptide repeat 293 326 IPR002885 -
Pste2g00618 962 NCBIfam pentatricopeptide repeat 362 396 IPR002885 -
Pste2g00618 962 NCBIfam pentatricopeptide repeat 151 185 IPR002885 -
Pste2g00618 962 NCBIfam pentatricopeptide repeat 222 256 IPR002885 -
Pste2g00618 962 NCBIfam pentatricopeptide repeat 512 545 IPR002885 -
Pste2g00618 962 NCBIfam pentatricopeptide repeat 186 220 IPR002885 -
Pste2g00618 962 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 730 896 - -
Pste2g00618 962 Pfam PPR repeat family 219 268 IPR002885 -
Pste2g00618 962 Pfam PPR repeat family 759 807 IPR002885 -
Pste2g00618 962 Pfam PPR repeat family 155 197 IPR002885 -
Pste2g00618 962 Pfam PPR repeat family 289 338 IPR002885 -
Pste2g00618 962 Pfam PPR repeat family 429 478 IPR002885 -
Pste2g00618 962 Pfam PPR repeat family 360 408 IPR002885 -
Pste2g00618 962 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 394 IPR002885 -
Pste2g00618 962 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 220 254 IPR002885 -
Pste2g00618 962 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00618 Pste-Chr2 6038694 6043506 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00618 721 910 Glycosyltransferase AT1G05670 24.348 7.94e-10 60.8