LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste2g00612	CCCTGATCAATTTGTCCATCTCGGTACATGATACATACCCTTTCTCACCAAAATACAGTGTCACTAGACTTTTCACCATTGGTTTGGGAAGTCTAAGTCTAACTTCTTCAACCCCACACACATGGCTTCTTGTTCTTGCCTCCCCTGGTGCTGAAAAATGGGAAGGACTCCTTGCTGCAGTCACGAGCAATTGAGAAAAGGGGCATGGACCGTTCAAGAAGATCAGAAGCTAATTGCTTACATTCAGAAACATGGCACTGGAGGCTGGCGTACCTTGCCACAGAAAGCAGGTCTTCAAAGATGTGGAAAGAGTTGCAGGTTGAGATGGTTTAACTACCTCAGACCTGACATTAAGAGAGGAAAATTAAGCCATGAAGAAGAGCAGACCATTATAAAACTTCAGGCGGTTCTTGGCAACAGGTGGTCGAGCATAGCAAAGCACTTACCAATGAGAACTGACAACGAAATCAAGAACTATTGGAATTCATATCTGAAAAAGAACTATGAAAAGCAGGTTGTTGATCCCTCTAGTCCAAAACCAATTAGCACTGATAGTTCCACAGAATCAAAATCCAGTGACTTGAGCATGGTTCCGTCAAAGAAAACTGATTGCTATGAACCAGATGCCACTCCACAACAATCTCATCAGCAGAGCTCATCAAAGTCGATGCCATCTTCAACTCAGCTTCTCAACAAAGTTGCTAGTAAAATTCTGGCATCAGGGTACCTTGAAGCAATCAAATCATGCCAACCTGTAGTTGCTGTGAACAGCAACAGTGAGAACGTGGTTAAAACTGGAATTGTGCTAGAAAAGGACAATAATGGAGACCCCCTTTTAACTAATTCGGCCTCAGCAACTCATTCTATAACATCTGCTCAACTTCTGAACAAGATGGCTACTTCTCTACCTCATAAAGCTCATGGCCTTGCAGCTGTAAAAGCTGTATTTTCAAAATTAAAGGAAGTTAGTGAAAAAGGTGACACTGTAAGTGATGGTAGCTTTATTAGCAGTGATCAAGTTGGAGGCTGTTTAAACACTTTTAGCCCTTTTGAGGATGGACCACAACTCATAACCAAAATAATTGGGACCTCTTCTAGTCCAATATTCAATCAAATGACCACACCAACATGCTTTTCTGACAATGAAGATAATTGGCAATGCGTTTCATCTAATTATGTTTCCTTCAGTAATTGTGCTGCAAGTGGTGGTGACTGCAGTGTATCTGAGATCAACTTGGGTGAGTCTTCTAGTTCCACACAGTGCTTCCTGTTTGAGAATGCTGATCTTGGAACCTGTGATGATGAGATAAGCAGGTACATTCAGTATTTGTAGAAAGAAAAAGAAAAAATCAGGAACACCTAATGCTAATTAAGAAAAACATAGATATAATAGGTGAGATGACTGATAAGAAGAGAGAAATAACGTGTTAATAGAGTGTTTGATACATAGAAATGTTCATAGAGAGGTGTTTGATAGAGGGAGTTATGTATCATCACTCTATTTTGTAATAAAAAATTCTACTCTTCCTTTGTA	1534	0.4009	MGRTPCCSHEQLRKGAWTVQEDQKLIAYIQKHGTGGWRTLPQKAGLQRCGKSCRLRWFNYLRPDIKRGKLSHEEEQTIIKLQAVLGNRWSSIAKHLPMRTDNEIKNYWNSYLKKNYEKQVVDPSSPKPISTDSSTESKSSDLSMVPSKKTDCYEPDATPQQSHQQSSSKSMPSSTQLLNKVASKILASGYLEAIKSCQPVVAVNSNSENVVKTGIVLEKDNNGDPLLTNSASATHSITSAQLLNKMATSLPHKAHGLAAVKAVFSKLKEVSEKGDTVSDGSFISSDQVGGCLNTFSPFEDGPQLITKIIGTSSSPIFNQMTTPTCFSDNEDNWQCVSSNYVSFSNCAASGGDCSVSEINLGESSSSTQCFLFENADLGTCDDEISRYIQYL	391

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste2g00612	391	Gene3D	-	69	143	-	-
	Pste2g00612	391	CDD	SANT	16	61	IPR001005	-
	Pste2g00612	391	Gene3D	-	14	66	-	-
	Pste2g00612	391	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Pste2g00612	391	FunFam	MYB transcription factor	69	140	-	-
	Pste2g00612	391	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	1	218	-	-
	Pste2g00612	391	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Pste2g00612	391	FunFam	MYB-related transcription factor	13	66	-	-
	Pste2g00612	391	MobiDBLite	consensus disorder prediction	154	174	-	-
	Pste2g00612	391	MobiDBLite	consensus disorder prediction	119	174	-	-
	Pste2g00612	391	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	62	116	IPR017930	-
	Pste2g00612	391	SMART	sant	13	63	IPR001005	-
	Pste2g00612	391	SMART	sant	66	114	IPR001005	-
	Pste2g00612	391	CDD	SANT	71	112	IPR001005	-
	Pste2g00612	391	MobiDBLite	consensus disorder prediction	124	146	-	-
	Pste2g00612	391	Pfam	Myb-like DNA-binding domain	67	112	IPR001005	-
	Pste2g00612	391	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Pste2g00612	391	SUPERFAMILY	Homeodomain-like	12	108	IPR009057	-
	Pste2g00612	391	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	61	IPR017930	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste2g00612	Pste-Chr2	5975011	5977371	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste2g00612	1	185	MYB Transcription Factor Family	AT1G74080	55.676	1.11e-65	210

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Pste2g00612		Myb_DNA-binding	1.4e-13	CL0123