Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00608 CACACCAGTATTTAGGGGCTTCTTTTTTCTCTGCTTTTTAATCCTTCTATTAACAACTCCACCCTCAGTTACCACCACATTTCAGTTCCATGTCTTCCATGATTTTCACCACCACCCTTCCCTTTTCTCCCTCACTTTCTGTGGACTTTCCTGCGGTTTCCTTTTTAATCAAAAACCACTTTAGCTCATTATTCTCTATATAGATTCTTCTGAATTCACTTCTTTCATTACAAAACCATAAAACATTCCCTCCCCTACCCAGTTGTTTTTATTTTATTTTCCTATGAAGTTTGAAACCTTGCTGTCTGATCTTTTGGAAATTCTTGTTAGCTTGTTTATGATCAAAGTTCTTGGCTAAGGTGGAAGCAGCAAAGAGGCTAAGTGGACATGGAAATGGAAAACGTTTCTGTTGTGTGTAAGGAAGAGGGTAAGATGGATTTGCCTCCTGGGTTTAGGTTTCACCCCACTGATGAAGAGCTTATAAGTCATTACCTTTGCAGAAAGGTAACTGACACTAACTTCTCAGCTAGGGCCATTGGAGAGGTGGACTTAAACAGGTCTGAGCCTTGGGAATTGCCATGGAAGGCCAAAATGGGAGAGAAAGAGTGGTACTTTTTCTGTGTGAGAGACAGAAAATACCCAACTGGGTTGAGGACCAACAGGGCCACTGAATCAGGATACTGGAAGGCCACAGGGAAAGACAAAGAGATTTTCAGAGGGAAATCTCTTGTGGGAATGAAGAAAACTTTGGTCTTTTACAAAGGAAGGGCACCCAAGGGAGAGAAATCTGATTGGGTCATGCATGAATATAGACTTGATGGTAAATTCTCTGTTCACAACCTCCCCAAAACTGCAAAGAATGAGTGGGTGATTTGCAGGGTGTTTCAGAAGAGTTCAGGTGTGAAAAAGACTCATATTTCAGGCATAATGATGTTGGACTCTTATGGAAACGAATTGGGTGCTTCTGCTTTGCCACCTCTCACTGATTCCTCACCTTCCATTGGCAACACCAAAGCACCTAGTGTGACTGAACCGGCTTACGTGCCCTGCTTCTCCAATTCAATTGATGTTCCAAAAGGGATCTTTGATTCCTTGAGCAACATCAACATCAACAACACCCTTTATTCAAATCCTTCATTCTACACCACTCAAGGGGTTCAACTTCATGCTCAAGCTCAACCAACTTTGCCATTTCCCGGTTCTTCAAACCATTACATTAGAACCTTCTTTGGCAACCATGGAAATGGATCAAACTTGAGGAATGGTTTTGGACCAGGTAGGGAAATGGTTAGTGTCTCACCGGAAACAAGTCTCTCTACTGATGTGAACGCTGAAATCCCATCTGTTGTGCCTAATCTTCATGTGGGTAAAGGGCACTTTCAGAGTGAAAGCAACCCAATGGACCTTGCTAGCTTGTGGAACTACTGATCTCAAAGAAAGATTTATCATTGGAGAGAAAGCCCACTTTTCAGCTGAGAAAAAAAAATGAAAAATCTTATTTACAATGTATTCTCTGGTTTCATTGTGATTCTGTCTTTGTTGTTGTTACTGTTATCTTTCTTGCTGTTGTTGTTGTTTGTCTGTATAGATTTTAGCTAAAAGATTCACTGAATAACAGTGAAGCATTAAGCATATATTTTGTACTGTAAGAATTCTTCTGAACCTATGCTGTTTTGGTCCTTTGATACTCTAGGCTTGTTATGGTTTGGTTGGCATGAACATGATTACTGTGTATCATATCAGCTTGGGTTAAAGTTAATACTAGAATGAGATTTGATTGG 1781 0.4048 MEMENVSVVCKEEGKMDLPPGFRFHPTDEELISHYLCRKVTDTNFSARAIGEVDLNRSEPWELPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATESGYWKATGKDKEIFRGKSLVGMKKTLVFYKGRAPKGEKSDWVMHEYRLDGKFSVHNLPKTAKNEWVICRVFQKSSGVKKTHISGIMMLDSYGNELGASALPPLTDSSPSIGNTKAPSVTEPAYVPCFSNSIDVPKGIFDSLSNININNTLYSNPSFYTTQGVQLHAQAQPTLPFPGSSNHYIRTFFGNHGNGSNLRNGFGPGREMVSVSPETSLSTDVNAEIPSVVPNLHVGKGHFQSESNPMDLASLWNY 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00608 346 SUPERFAMILY NAC domain 15 168 IPR036093 GO:0003677|GO:0006355
Pste2g00608 346 Gene3D NAC domain 27 172 IPR036093 GO:0003677|GO:0006355
Pste2g00608 346 FunFam NAC domain-containing protein 100-like 27 172 - -
Pste2g00608 346 Pfam No apical meristem (NAM) protein 19 143 IPR003441 GO:0003677|GO:0006355
Pste2g00608 346 ProSiteProfiles NAC domain profile. 18 168 IPR003441 GO:0003677|GO:0006355
Pste2g00608 346 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00608 Pste-Chr2 5879272 5881296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00608 16 346 NAC Transcription Factor Family AT5G07680 55.685 7.67e-126 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste2g00608 NAM 3.2e-39 No_clan