Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00602 CGACAGCATACCAAAGAATAAAAGTAACAATGCGTGTCTACTCCCAATAATCTTAACGGACACTCGGATGCAGCTAATTGGAGTTTCCAACATCATGCATGTCATGTTTCATGTCGCAAAACTCCAAACTAGTTTTACTTCTTTTTTTTCTTTTTCTCTTTTTCCATTTGTGTCCCATTCCAATAAAACTAAGCTATTACAACACTTTCGTTTCCCACTGTAGGCATCATATACCTTCACTAACACAACTTTCTCCCATCTCCACCAAGTAAAAGCTTTCACTCAACCATGCCGGATTCAACCTCTTCTAACCCTGATAAGGGTCAATCCTCTTCCAACCCGAAAAGTGATAAGAAGGATTATTCCACAGCGATATTAGAACGCAAGAAGTCTCCTAACCGACTTGTTGTTGATGAAGCAATTAATGATGATAATTCTGTGGTTACTTTACACCCTGAAACAATGGAGAAGCTTCAGTTTTTCCGGGGTGACACTGTTCTGATAAAGGGTAAGAAGCGAAAGGACACAATTTGCATTGTTCTTGCTGATGATCAGTGTGATGAACCAAAAATAAGGATGAATAAAGTTGTTCGGGCTAATCTTAGGGTACGGCTGGGAGATGTTGTATCTGTCCATCAATGCCCTGATGTGAAGTATGGAAAACGAGTTCACATCCTTCCAATTGACGACACCATTGAGGGTGTAACTGGCAACTTGTTTGATGCATATCTGAAGCCATACTTTCTGGAGTCTTACCGGCCTGTCAGGAAAGGGGACTTGTTCCTAGTTAGAGGTGGGATGCGTAGTGTTGAATTCAAGGTAATAGAGACTGATCCGGGTGAATACTGTGTTGTGGCACCTGATACTGAAATCTTCTGTGAGGGAGAACCAATCAAACGTGAAGATGAAGAAAGACTAAATGAAGTTGGCTATGATGATGTTGGTGGTGTTAGGAAACAAATGGCTCAAATTCGTGAGCTAGTAGAGCTTCCACTCAGGCATCCACAACTCTTCAAATCAATTGGTGTTAAGCCCCCGAAAGGAATCTTGCTTTATGGACCACCTGGTTCTGGGAAGACTCTGATTGCAAGAGCAGTTGCTAATGAGACTGGTGCATTCTTCTTTTTGATTAATGGACCAGAAATAATGTCAAAGCTGGCCGGTGAGAGTGAAAGCAACCTGAGGAAGGCATTTGAGGAAGCTGAGAAGAATTCACCTTCTATAATTTTTATTGATGAATTAGACTCGATAGCTCCAAAGAGAGAAAAGACACATGGTGAAGTGGAGAGGCGTATTGTTTCACAACTTTTGACTCTTATGGATGGTCTCAAAACCAGATCACATGTTATCGTTATTGGAGCCACCAATAGGCCCAATAGTATTGATCCTGCTCTTAGAAGGTTTGGAAGGTTTGATCGGGAGATTGACATTGGTGTACCAGATGAAGTTGGAAGGTTGGAGGTTCTTAGAATTCATACAAAGAACATGAAACTTTCTGACAATGTTGATCTTGAAAAGGTTGCTAGGGATACTCATGGTTATGTTGGAGCAGATCTTGCTGCTCTTTGCACAGAGGCTGCACTACAGTGTATCCGGGAGAAAATGGATGTGATTGACTTAGAGGATGAAACAATTGATGCTGAGGTGTTGAATTCCATGGCTGTGACTAATGAACACTTTCAAACTGCTTTAAGTTCTTCAAACCCATCTGCCCTGCGTGAAACAGTTGTGGAGGTTCCAAATGTTTCCTGGGATGATATTGGAGGCTTAGAGAATGTCAAAAGGGAGCTTCAAGAGACTGTTCAATACCCAGTGGAACATCCTGAGAAGTTTGAGAAATTTGGCATGTCACCTTCCAAAGGTGTTCTCTTTTATGGACCTCCTGGCTGTGGTAAAACCCTGCTTGCAAAAGCAATTGCTAATGAGTGCCAGGCCAACTTTATAAGCGTTAAGGGACCTGAGTTGCTGACAATGTGGTTCGGTGAAAGTGAGGCAAATGTTCGTGAGATATTTGACAAAGCTCGGCAGTCAGCTCCTTGTGTTCTCTTCTTCGATGAACTTGACTCAATTGCAACCCAGAGAGGTAGTTCTGTAGGGGATGCTGGTGGTGCTGCAGATAGGGTGTTGAACCAACTGTTAACAGAAATGGATGGTATGACTGCTAAGAAGACAGTTTTTATCATTGGGGCAACAAACAGACCAGACATTATAGACCCTGCATTGCTCAGGCCTGGACGTCTGGATCAATTGATTTACATCCCTTTACCAGATGAAAGTTCACGTCTTCAGATCTTCAAGGCATGCTTGAGGAAGTCTCCAATGTCAAACGATGTTGACCTAGCAGCTCTTTCACGTTATACACATGGATTCAGTGGCGCAGACATTACAGAAATTTGTCAAAGAGCGTGCAAATATGCCATCAGGGAAGATATTGAAAAGGACATTGAGAAGGAGAGAAGAAAAAGAGAAAATCCTGAAGCCATGGAAGAAGATGACACTGATGAGGTCCCTGAGATAAAGCCTGCTCACTTCGAGGAGTCTATGAAGTTTGCTCGTCGGAGTGTCAGTGATGCTGACATCAGGAAATACCAACTCTTTGCTCAGACCTTGCAACAGTCTCGGGGAATTGGATCTGAGTTTCGGTTTCCAGATCGAAATGAGAACACAGCACCAGGTGCTTCAGACCCTTTCTCATCTGTTGCCCCTGAAGGAGATGATGATTTGTACAGTTAGCAGTGATGTGAGTTGGGTAAGGTGGATGGTTTTCGCTGTATCTGCCATGACTTGTAGGAATATCATGATACATTTTTGTTTTGTTGAGGCAAATGTTTCTGTTTCATGTTAAACTAGCAGTTTATAATGCTCCTTTTTGCGAGTTAAGACTGATATTATTATATATGTTACATAGTCAAACCTGTATGTTTGTGTTGTGTGTATATAATTTGACTCTTATGAAGAGTCCAAAGGGGAGGTTATGTGTGCTGATTCCTTGCTAAGGAAGGCTCATATAGTTGTTCACTGC 3022 0.4212 MPDSTSSNPDKGQSSSNPKSDKKDYSTAILERKKSPNRLVVDEAINDDNSVVTLHPETMEKLQFFRGDTVLIKGKKRKDTICIVLADDQCDEPKIRMNKVVRANLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAYLKPYFLESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKTRSHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDNVDLEKVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALSSSNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDESSRLQIFKACLRKSPMSNDVDLAALSRYTHGFSGADITEICQRACKYAIREDIEKDIEKERRKRENPEAMEEDDTDEVPEIKPAHFEESMKFARRSVSDADIRKYQLFAQTLQQSRGIGSEFRFPDRNENTAPGASDPFSSVAPEGDDDLYS 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00602 814 Pfam ATPase family associated with various cellular activities (AAA) 526 659 IPR003959 GO:0005524|GO:0016887
Pste2g00602 814 Pfam ATPase family associated with various cellular activities (AAA) 253 382 IPR003959 GO:0005524|GO:0016887
Pste2g00602 814 FunFam Cell division control 48 121 217 - -
Pste2g00602 814 ProSitePatterns AAA-protein family signature. 353 371 IPR003960 GO:0005524|GO:0016887
Pste2g00602 814 Gene3D - 121 217 - -
Pste2g00602 814 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 474 IPR027417 -
Pste2g00602 814 CDD RecA-like_CDC48_r2-like 497 657 - -
Pste2g00602 814 MobiDBLite consensus disorder prediction 1 29 - -
Pste2g00602 814 FunFam Transitional endoplasmic reticulum ATPase 214 382 - -
Pste2g00602 814 Pfam Cell division protein 48 (CDC48), N-terminal domain 38 119 IPR003338 -
Pste2g00602 814 NCBIfam CDC48 family AAA ATPase 39 775 IPR005938 GO:0016787
Pste2g00602 814 ProSitePatterns AAA-protein family signature. 629 647 IPR003960 GO:0005524|GO:0016887
Pste2g00602 814 Gene3D - 15 120 - -
Pste2g00602 814 MobiDBLite consensus disorder prediction 780 814 - -
Pste2g00602 814 SUPERFAMILY ADC-like 34 118 IPR009010 -
Pste2g00602 814 SMART CDC48_N_2 38 121 IPR003338 -
Pste2g00602 814 SMART CDC48_2_2 138 204 IPR004201 -
Pste2g00602 814 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 484 772 IPR027417 -
Pste2g00602 814 FunFam Transitional endoplasmic reticulum ATPase 15 120 - -
Pste2g00602 814 PANTHER AAA-FAMILY ATPASE 452 777 - -
Pste2g00602 814 MobiDBLite consensus disorder prediction 1 23 - -
Pste2g00602 814 SMART AAA_5 249 385 IPR003593 GO:0016887
Pste2g00602 814 SMART AAA_5 522 661 IPR003593 GO:0016887
Pste2g00602 814 CDD RecA-like_CDC48_r1-like 217 382 - -
Pste2g00602 814 FunFam Cell division control 48 384 475 - -
Pste2g00602 814 FunFam Transitional endoplasmic reticulum ATPase 476 659 - -
Pste2g00602 814 Pfam AAA+ lid domain 405 447 IPR041569 -
Pste2g00602 814 Pfam AAA+ lid domain 681 721 IPR041569 -
Pste2g00602 814 Gene3D - 384 475 - -
Pste2g00602 814 SUPERFAMILY Cdc48 domain 2-like 120 212 IPR029067 -
Pste2g00602 814 Gene3D - 663 771 - -
Pste2g00602 814 Gene3D - 218 382 IPR027417 -
Pste2g00602 814 Pfam Cell division protein 48 (CDC48), domain 2 140 203 IPR004201 -
Pste2g00602 814 Gene3D - 476 659 IPR027417 -
Pste2g00602 814 MobiDBLite consensus disorder prediction 720 739 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00602 Pste-Chr2 5809642 5814776 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00602 455 718 Calmodulin-binding Proteins AT3G56690 47.727 1.40e-78 272