Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00584 ATGGCATCATCCAGCTCCTACAATTCTCCATGTGCTGCCTGCAAATTCTTGAGGAGGAAGTGCCTTCCAGGGTGCATCTTTGCACCTTACTTCCCGCCAGAAGAGCCTCAAAAGTTCGCAAACGTGCACAAGATCTTCGGTGCTAGCAATGTGACAAAGCTTCTCAATGAGCTTCTCCCTCACCAGAGGGAAGATGCAGTGAACTCTCTGGCCTATGAAGCCGAGGCACGTGTGAGAGACCCCGTTTATGGATGTGTAGGTGCCATCTCATTCCTCCAGAGACAAGTTCAAAGGCTCCAAAAGGAACTTGATTCAGCCAATGCTGATCTCCTTCGCTATGCTTGCAATGACATTGCTCCATCCTCTCTTTCTGTGCCACCAGCAACAGCAATTAATCTACAAATTCCCCAAAGATCTTTTAGTGCAAGGTTTGGAAATGAAGCAAGTGGGTTTTATAGGCCTTCTCCTACCGCCACTAATTATTCTTACCCTTACTCTCTTCCATGGACTGATACCTCTCGTGAGGATATCAATGATGGAGGAGGAGGAGAAGCCTTACTTGGACTCTTCTGGGGCTAG 579 0.4784 MASSSSYNSPCAACKFLRRKCLPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDSANADLLRYACNDIAPSSLSVPPATAINLQIPQRSFSARFGNEASGFYRPSPTATNYSYPYSLPWTDTSREDINDGGGGEALLGLFWG 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00584 192 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Pste2g00584 192 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Pste2g00584 192 Coils Coil 89 116 - -
Pste2g00584 192 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00584 Pste-Chr2 5574786 5575484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00584 1 171 AS2 family AT5G63090 67.978 1.22e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pste2g00584 LOB 5.5e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02065 6 9712683 9715154 Pste2g00584 2 5574786 5575484 ECH
Pste2g00584 2 5574786 5575484 Pste2g00584 2 5574786 5575484 ECH
Pste6g02065 6 9712683 9715154 Pste2g00584 2 5574786 5575484 PCT