Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00582 CAGGTTTCAAAGTAATCCGTATCTCTTAATCTCGAACTCATCTTTGTTTGAGACTTTGAGAAAGGGAACGAGCAAAGCACCTGTGCCCTAAGCAAACGGCCACCGTGGATTAGTGAGCTCTGCCACCGTCGCGAGCACCGCAGAAAGCCGAGACTGATTCTGCCATCGCGCTTTTGCTCCGCCGTGGTCCGATGCAGCCTCCCCACCCCCGCCGCGGCTTCTGGATTAAGCGCATATTTATCAACTGAGAATGATCATTTGTTACAAACTTATGTGGTCGTTGTTGCTGCCAATATCACATATCCCTTGGAGCAAGTTCACATTGCTATCTTAATGTTGATTCAGTTTGAATGGCTCCATTCTGAACTCAGCAACATTTGTAAGTCCCTCTTGAGGGTTAAGCAGTTACATGCAGTCCTTTTGAAGAGCCATCTCTCACAAGACCCCTTTTATGCAACAAAAATTGTTAGGCTGTACGCAGCCAACAACGACGTTAACTCTGCCCACCATGTATTCAACAAAACTTCTAACCGAAGTGTCTACCTTTGGAACTCCATGATCCGGGCTTTCGCACAATCCCAAGAATTTTTCAATGCAATCTCTCTGTTTAGAACCATGCTTGGGGCTGACATAAGTCCTGATGGTCACACTTATGCTTGTGTTATTCGTGCATGTGCTGACAACTTTGATTTCAGTGTGTTAAGGCGTGTTCATGCAGGTGCTGTGGCTGCAGGATTAGGACTGGACCCTGTTTGTTGCAGTGCACTTGTGACTGCTTATTCAAAACTTGGCCTTGTTCATGAAGCGCATAGAGTATTCAATGGGATTGCTGAACCGGATTTAGTTTTGTGGAATTCATTGATTTCTGGTTATGGGAGCTCTGGTCTGTGGGATGTGGGGATGCAGGTGTTTAGTGGGATGAGACTTGTCGGGAAGAGGCCTGATGGATATACACTGGCTGGGGTGCTTGTGGGTATTGCGGATTCTGGAGAGCTGACCATTGGTCAAGGGTTACATTGTTTGAGTCAAAAGAGTGGGCTTGATTCTGATTCTCATGTTGGTTGTTTGCTGGTGAGTATGTACTCTAGATGTAAGTGTATGGCTTCGGCATATAGAATCTTTTGCAGTGTTTTGTATCCTGATTTGGTTACATGGTCTGCTCTTATAACGGGGTATTCTCAGGCAGGGGAGTATGAGAACGTGCTGTACCTTTTCAGAAAATTAAACATGGAAGACAAGAAGCCAGATTCTGTTTTGGTTGCCAGTGTATTGGCTTCTATTTCTCAGACCACAAATGTAGGACTCGGATCATGCTGTAATTCTTCTGGAAATTCTGAGCTGGGAGAAACTGTAGCTCAGCAGCTTTTTCAAACTAATCCTGCTGATAAAGTTTACAGGGTTATGCTTTCTAATTTATATGCCAGTGATGGGAGGTGGGATGATGTAAAGAAGTTGAGGGACAGAATGGCAGGAGGTTCGAGAAAAATGCCTGGAGTAAGCTGGATTGAAGGCAGTTAG 1518 0.4513 MLIQFEWLHSELSNICKSLLRVKQLHAVLLKSHLSQDPFYATKIVRLYAANNDVNSAHHVFNKTSNRSVYLWNSMIRAFAQSQEFFNAISLFRTMLGADISPDGHTYACVIRACADNFDFSVLRRVHAGAVAAGLGLDPVCCSALVTAYSKLGLVHEAHRVFNGIAEPDLVLWNSLISGYGSSGLWDVGMQVFSGMRLVGKRPDGYTLAGVLVGIADSGELTIGQGLHCLSQKSGLDSDSHVGCLLVSMYSRCKCMASAYRIFCSVLYPDLVTWSALITGYSQAGEYENVLYLFRKLNMEDKKPDSVLVASVLASISQTTNVGLGSCCNSSGNSELGETVAQQLFQTNPADKVYRVMLSNLYASDGRWDDVKKLRDRMAGGSRKMPGVSWIEGS 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00582 394 FunFam Pentatricopeptide repeat-containing protein 226 327 - -
Pste2g00582 394 FunFam Putative pentatricopeptide repeat-containing protein At1g64310 4 124 - -
Pste2g00582 394 Pfam PPR repeat 272 297 IPR002885 -
Pste2g00582 394 Pfam PPR repeat 171 197 IPR002885 -
Pste2g00582 394 Pfam PPR repeat 140 163 IPR002885 -
Pste2g00582 394 Gene3D Tetratricopeptide repeat domain 130 222 IPR011990 GO:0005515
Pste2g00582 394 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Pste2g00582 394 Gene3D Tetratricopeptide repeat domain 223 394 IPR011990 GO:0005515
Pste2g00582 394 Gene3D Tetratricopeptide repeat domain 7 127 IPR011990 GO:0005515
Pste2g00582 394 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Pste2g00582 394 NCBIfam pentatricopeptide repeat 272 305 IPR002885 -
Pste2g00582 394 NCBIfam pentatricopeptide repeat 171 204 IPR002885 -
Pste2g00582 394 NCBIfam pentatricopeptide repeat 70 103 IPR002885 -
Pste2g00582 394 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Pste2g00582 394 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 327 392 IPR046960 GO:0003723|GO:0009451
Pste2g00582 394 Pfam PPR repeat family 68 115 IPR002885 -
Pste2g00582 394 Pfam E motif 333 392 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00582 Pste-Chr2 5548940 5551566 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00582 88 382 Glycoside Hydrolase AT3G49170 25.658 5.38e-21 93.6