LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste2g00573	ATGAAGAAGAGACAGGTGGTGCTGAAAAGAGATGTGGCCAACACCTCATCTTCAGTGATCAGAAACATAAGATATGGTGAGTGCCAGAAGAATCATGCAGCCAATATTGGAGGGTATGCTGTGGATGGTTGCAGGGAATTCATGGCTAGTACAGGGGATGGAGCTGGTGGGGCTCTTATATGTGCAGCTTGTGGCTGCCACAGGAACTTTCACAGAAAGGAAGTGCAAACTGAGGTAGTCTGTGAGTACTCTCCACCTAATTCTGGTCGCTAA	273	0.4762	MKKRQVVLKRDVANTSSSVIRNIRYGECQKNHAANIGGYAVDGCREFMASTGDGAGGALICAACGCHRNFHRKEVQTEVVCEYSPPNSGR	90

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste2g00573	90	ProSiteProfiles	Zinc-finger ZF-HD dimerization-type profile.	25	74	IPR006456	-
	Pste2g00573	90	NCBIfam	ZF-HD homeobox protein Cys/His-rich dimerization domain	24	75	IPR006456	-
	Pste2g00573	90	PANTHER	ZINC-FINGER HOMEODOMAIN PROTEIN 2	14	78	-	-
	Pste2g00573	90	Pfam	ZF-HD protein dimerisation region	23	75	IPR006456	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste2g00573	Pste-Chr2	5491332	5491604	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste2g00573	1	88	Zinc finger-homeobox gene family	AT1G18835	75.281	3.72e-41	128

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	zf-HD	Pste2g00573		ZF-HD_dimer	2.1e-28	No_clan

Showing 1 to 1 of 1 entries