Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00572 ATGGGTCGCCATTCCTGTTGTTTAAAGCAAAAACTAAGAAAAGGTTTATGGTCCCCCGAAGAAGATGAGAAACTATTCAATTACATAACCAGATTTGGTGTTGGCTGCTGGAGTTCAGTTCCCAAACAAGCCGGACTGCAAAGGTGTGGAAAGAGTTGCAGATTGAGATGGATAAACTACTTGAGGCCTGATTTGAAGAGAGGAATGTTCTCTCAACAGGAGGAGGATCTTATAATTAGTCTTCATGAAGTTCTAGGAAATAGGTGGGCTCAAATTGCAGCACAATTACCAGGGAGAACAGATAATGAGATTAAGAACTTTTGGAATTCATGTTTGAAGAAGAAGCTAATGAAGCAAGGGATTGACCCTGCTACACACAAGCCTCTTCTAAGTGCTGAAGATCACATAGTAAAGGAAGAGAAGGAAACCATAGAGACACCACCTATACTATTACCAGTGTCTCAAGGGATTTTAGTTTCCTCACAAGAATCACCACTTGTGGTCAACAATTCAAATTACTATGTTGGAGGGCTAAATGTAACAGAGAATGCATTGGACCCTTTGTCCTACTTTGAATTCCAAATGGGTTACAATTCAAGTGTGAGTCAGTGCCATCCAATTAGACAATTTGATCAGAACCAGGGGGGAACCAATTCAAGCTATGCATTCTCCTCATTGCCATGTCTAAATAGTTCCGATCATGGGAACATGTCGGTGGCAGAGTTTTCAGATAACAACTCAGCTTCTAAAATAAGTTCCTGCAATAGCTCAAGCATGAGTGTTTATCCAGGGGGAGGATGTCAAATGTTGGAAAATGCAGGGTTCTCATGGGATGGTGAGAATAATAAGATTGATCCTTTGTTACAGTTTCAAGTAAATGTCGTCAAAACTGAAGAGTTGATCAAGACAAGTTCTTGGCAAGAGGGTCAGCTTCTGACTCAGAATTCCATAGATTTCACAAGCTATCCGTTGTTGTCACTGTCGGAGGATCTAATCGGAGCAAGTTTTGATGTGTTCCCGCAGATGTGA 1029 0.4111 MGRHSCCLKQKLRKGLWSPEEDEKLFNYITRFGVGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPATHKPLLSAEDHIVKEEKETIETPPILLPVSQGILVSSQESPLVVNNSNYYVGGLNVTENALDPLSYFEFQMGYNSSVSQCHPIRQFDQNQGGTNSSYAFSSLPCLNSSDHGNMSVAEFSDNNSASKISSCNSSSMSVYPGGGCQMLENAGFSWDGENNKIDPLLQFQVNVVKTEELIKTSSWQEGQLLTQNSIDFTSYPLLSLSEDLIGASFDVFPQM 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00572 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pste2g00572 342 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pste2g00572 342 FunFam Myb transcription factor 11 67 - -
Pste2g00572 342 CDD SANT 70 109 IPR001005 -
Pste2g00572 342 Gene3D - 69 143 - -
Pste2g00572 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pste2g00572 342 FunFam Transcription factor MYB86 69 140 - -
Pste2g00572 342 CDD SANT 17 61 IPR001005 -
Pste2g00572 342 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pste2g00572 342 PANTHER MYB DOMAIN PROTEIN 55 1 263 - -
Pste2g00572 342 SMART sant 66 114 IPR001005 -
Pste2g00572 342 SMART sant 13 63 IPR001005 -
Pste2g00572 342 Gene3D - 11 67 - -
Pste2g00572 342 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pste2g00572 342 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pste2g00572 342 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00572 Pste-Chr2 5482668 5483896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00572 1 133 MYB Transcription Factor Family AT4G01680 84.211 4.45e-81 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste2g00572 Myb_DNA-binding 1.9e-13 CL0123