LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste2g00567	CTTGTCTCTGTGTTAAGAGTAGCATATATAAACTACAAGGGGTTCTTCAAAAAAAAAAAAATATAAACTACAAGGGAAAGAGATGACAACTTGATCTCACAATCCCCAGAAGAAGTGAAGAACAAAGAAAAGTTAATTGCTATAAGCTAGGTGGTTTTATTTCTTATACCATTTTGTTTTTTGGGTACAAAATGGGAAGACCACCTTGCTGTGACAAGATTGGGATTAAGAAAGGGCCTTGGACTCCTGAGGAAGACATCATCTTGGTTTCTTATATTCAAGAACATGGACCCGGGAATTGGAGATCAGTTCCCACTAACACAGGTTTGATGAGATGCAGCAAAAGTTGCAGACTCAGATGGACTAATTATCTCAGACCTGGTATCAAACGAGGGAATTTCACTGATCATGAAGAAAAAATGATCATCCACCTTCAAGCACTCTTGGGTAACAGATGGGCTGCTATAGCTTCTTACCTTCCCCAGAGGACAGACAATGACATAAAGAACTATTGGAATACCTATTTGAAGAAAAAGCTGAAGAAGATGCAAAGTGAGAGTGATGATGGCAATGATGAAAAGGGAAACAACAACTCTTGCTCACAGATAAAGGGTCAATGGGAGAGAAGGCTTCAAACAGATATCCACATGGCCAAACAAGCCTTATGTGAGGCACTGTCCCTTGACAAACCAACCCAAATTTTCCCTGAGACCAAATTGCCCTCCACTTCTTTTCACCACACAAGTACACAAAACCAAACATCATCAACATCCTTGTATGCATCTAGCACAGAAAACATATCAAGATTGCTTGAGAAAACCCCAAACACACCCCCAAAAACAAAGCCAAAACCTCAACCACCCTTCAGCAACATGGTAAGCACAGGGTCTAGCTCAAGTGAGGGAACACAAAGCAGCATCACATGCACACAGGACCATGTTCTTGACTCCTTGTGGAGCTTCAACTCCGAACGTTCTCAATCTGAAGAAAACACCAACTTGTGTGAAAGCAAGCCCAACCAAGTACCTCTCATGTTGTTGGAGAATTGGCTTTTCGATGATGCTGCACCTCAATGCAACCAAGATCTAATGCACATGTCACTGGAGGAAAGTGCAGAAGGGTTGTTC	1127	0.417	MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTYLKKKLKKMQSESDDGNDEKGNNNSCSQIKGQWERRLQTDIHMAKQALCEALSLDKPTQIFPETKLPSTSFHHTSTQNQTSSTSLYASSTENISRLLEKTPNTPPKTKPKPQPPFSNMVSTGSSSSEGTQSSITCTQDHVLDSLWSFNSERSQSEENTNLCESKPNQVPLMLLENWLFDDAAPQCNQDLMHMSLEESAEGLF	312

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste2g00567	312	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Pste2g00567	312	CDD	SANT	69	112	IPR001005	-
	Pste2g00567	312	MobiDBLite	consensus disorder prediction	173	211	-	-
	Pste2g00567	312	Gene3D	-	13	66	-	-
	Pste2g00567	312	CDD	SANT	16	61	IPR001005	-
	Pste2g00567	312	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	66	116	IPR017930	-
	Pste2g00567	312	SUPERFAMILY	Homeodomain-like	11	108	IPR009057	-
	Pste2g00567	312	FunFam	MYB-related transcription factor	13	66	-	-
	Pste2g00567	312	Pfam	Myb-like DNA-binding domain	67	112	IPR001005	-
	Pste2g00567	312	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Pste2g00567	312	SMART	sant	13	63	IPR001005	-
	Pste2g00567	312	SMART	sant	66	114	IPR001005	-
	Pste2g00567	312	Gene3D	-	68	137	-	-
	Pste2g00567	312	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Pste2g00567	312	FunFam	Transcription factor MYB30	68	126	-	-
	Pste2g00567	312	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	1	248	-	-
	Pste2g00567	312	MobiDBLite	consensus disorder prediction	223	242	-	-
	Pste2g00567	312	MobiDBLite	consensus disorder prediction	173	242	-	-
	Pste2g00567	312	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	65	IPR017930	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste2g00567	Pste-Chr2	5396309	5397813	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste2g00567	1	312	MYB Transcription Factor Family	AT5G62470	50.136	5.83e-106	311

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Pste2g00567		Myb_DNA-binding	9.3e-15	CL0123