LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste2g00564	ATAAACCCCAAATGCACATCCCAGGGTTTTCAAGCCCTAAGCCTCGAACACAGGAGGAACAAAAAATTTCTAGAGTTCCTCTTTCAGTTCTCTCTTTCTAGAATCTTCCAATTCTAATCTTCTTTTCTTCACTACAACTAACTCACTGAGTCATGGAATCCAAACCCGGTCAAAATATCAAGCTCCTCTGCAGTTACGGCGGCAAGATACGTCCACGCGCCACCGATGGTGAACTCCGTTACGTCGGCGGCCACACCAGAGTCCTTACCGTTGATCGTTCAATTTCGTTTTCAGAACTGATGGTGAAGCTTAACGAGTTCTGTGGTTCGTCTGTGATCTTGCGGTGTCAATTGCCCAAGGGAGACTTGGAGACGTTGATCTCCATCACCAACGACGAAGATCTGGCGAATATAATCGAAGAATACGATCGTGCTTCCTTGAAATTGGCGCATCCATTGAAGATCAAAGCCGTTCTCTCGCCGCCGAAATCGACGAAGAAGGTTTCGTCTGCTCCGTCGTCCTCGGCGTCGTCCAGCGCCAGTCACTCTCCGTCCAGATCGCCGCACACCTCCGTTGAATCTCTGCCGTACGCTGCGGCGTACCGGATCGGCCGCCATCATCGGTCGCCACCGCCGCCGGTTGCGTACGCTATCGGCGCGCGTAATGGCACCGCCAAGGCTTGCTGCTACACGCAATTCGATAGAAGTCCTAGATTTCTGTATCGTGGACCTCACTGCAATTATTACTGCCACTGAGGGGAATCGTTTTATTTACAGTAAATACAGTTAGAAGAGAATCGCCAACACAAAGTTGATTCTATACCGAATATGATGACGAAAAATATATCAAAGGACAAAAAATAGGGGGAAAAATAGATATGAGTGGACTGTGAAATACTACCATTGATTTTTTATTTGATAAAATTTTAGATGTGAATGAGTTTAGGTTTCAATATTTTTGAATCCGGACTTTATTTTTTAACAATTTCTGGAACTGTTTTTAACAGCTAGGGTTTTACTAACTGCGTTAGATGAGACAACCAACGATTCCAGTGACGTGTTATATGTTGCTTTTGGTGGTTTTCCGTGTTTACTGAGGCGCTTTTACGTGTTTATTGGGGCTACACCCGTTATTTTCGTCTGACTCGATCGTTTTAGCCGGGTACGTATGTTTTTTTCTGTTTTATATTTATTTGTTAATTTTATTTATTTGTTTGAATTAATGTGATTATTATCGTTGATTTTTATCGTTAAGCTTTTCGTATGATCTGCTTGTTGGTGTATTAGATTTTCAATTTACAGGTCAATAAAAGGATGAAAACGCGCTTCCGTGAATAGCGGAAATTGGGGAAGAGGACAAAAGCCTTGAACCTTCTTGAAATTGGAATTTCAGGTTAAGTGGATTGAGAAAATTGAATGTATTACGAAAGATACTACTATACACAAAATTGAGTGATTGAATGTGGTGGCCAAGGAGAAGGAAATGCCATAAATTTAAAATTGTACGGGAATATATTATTTTGAAATACTTATCCTAAATAAGAGAGGTCCAATAATAAATAGAATAAAAAAAATAATGGATGGTATAATAAGTCCAATAATGATATGGAGGACCAAAGGCGAAAGATAGCCGCGGGTGGAGCAAGTTGGTACTTGATAGTGACATAATTAAGGCATATTTCTGGTAGCCTTTTGATGGGTTCAAGGGCTCACAACTTTATCTGATGATAGGATACGGTTGACGAATAAATAGAAAAATACAATCAGTTTGAAGAAAGAATCCGCCCCAGGCTCGCACCATTTGGATTCAGGAGAAGATCCAAACTTAACATGAAAAATAGTGTTTTCTCGTTAATATTACTAAAATTTGAAATCACTGATAAAAAGTATTCATATATGCTCTCAATTGTTTTACTTTCCGGTGAATTATTTAGAAAGTAAATTTTTTTACTCAAACAAT	1959	0.3997	MESKPGQNIKLLCSYGGKIRPRATDGELRYVGGHTRVLTVDRSISFSELMVKLNEFCGSSVILRCQLPKGDLETLISITNDEDLANIIEEYDRASLKLAHPLKIKAVLSPPKSTKKVSSAPSSSASSSASHSPSRSPHTSVESLPYAAAYRIGRHHRSPPPPVAYAIGARNGTAKACCYTQFDRSPRFLYRGPHCNYYCH	200

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste2g00564	200	MobiDBLite	consensus disorder prediction	112	141	-	-
	Pste2g00564	200	CDD	PB1_UP2	12	99	-	-
	Pste2g00564	200	Pfam	PB1 domain	27	97	IPR000270	GO:0005515
	Pste2g00564	200	SUPERFAMILY	CAD & PB1 domains	25	116	-	-
	Pste2g00564	200	PANTHER	OS05G0427100 PROTEIN-RELATED	5	155	-	-
	Pste2g00564	200	SMART	PB1_new	23	111	IPR000270	GO:0005515
	Pste2g00564	200	Gene3D	-	29	107	-	-

Showing 1 to 7 of 7 entries

Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste2g00564	Pste-Chr2	5355058	5357109	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste2g00564	10	90	MAP Kinase Kinase Kinase	AT2G35050	49.383	4.37e-23	94.4

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste2g00564	2	5355058	5357109	Pste2g00564	2	5355058	5357109	ECH
	Pste6g02019	6	9436455	9437394	Pste2g00564	2	5355058	5357109	PCT

Showing 1 to 2 of 2 entries