Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00554 CAACTACACGTTTTAAGTTTCACACACCAAATCCCATTCCCTCTCACTTTCTTTCATCTTTCAATTCTACGTAGTGGATTTTCGTCCGTGTATGCAACGAAGGAGCCACGCACGAACACGATGCCCCTAACCACAACGATATAATCTTCCTTCCTTCCTCACTCTCTTTCTCTTCTCTTCTCTCCCTTACTCTTCCAATGGCTTCGTCTCTTTCCCCTTCTCCATTCTCTCTCGACCAAATCCTTCGCGAAGTCGACGATTTCGTTTTGGAAAATAAGTCAGAAGGTTTGTCATGGGACACATTACATTATGTTTACGAGCTTGTGCAGAATGGTAATGCGGCATTTCGAGAGAACAGAATGGAAGAGGCAATCAACCTTTACTCCAGAGCCAATAACATCAAATCAGGTGATCCAATCATCCTCAGCAATCGAAGTGCAGCTTATATTAGGATTAGCCAATATTTCATGCACAGAGCACCATCATCTTCAGAACGTAGGCCACTGAGTGGGCTTGAACCCACAACACTTGCTGAACTGGGTTTGAAGGATGCTGAGAAGGTTGTTGAACTCCAAAGTAATTCAGCAAAAGCATATCTTTTAAAGGCCAATGCTCTTCTCTTGTTAGAGAAGTATGAAAAAGCCCGGGATGTTATTCTTTCTGGTCTTCAAGTTGATCCTTTTAGTAATTCTCTTCGAGCTTCTCTTCAAAATTTGGAAAGAGTTTCATCTAGTTCAACAGGGACTAGTACACATGGACATCCAGAACGTAATGATGATTTTGATTGCACTCTCTGCCTGAAATTACTGTATGAACCTGTCACAACACCTTGTGGACATTCATTTTGCCGTTCATGTCTGTTTCAGTCAATGGATCGTGGAAACAGATGTCCATTGTGCAGGACAGTTCTGTTTATTAGTCCCAGAACATGTTCCATCAGTGTGACATTGAAGAACATCATACAAAAGAACTTTCCTGAAGAGTATGCTGAAAGGAAGCAAGAGCAAGATGGTTTAATCAGTGCCGGTGTTGATTTACTCCCTCTTTTTGTCATGGATGTTGTCATACCATGTCAGAGGTTTCCACTTAATATATTTGAACCTCGGTATAGACTCATGGTTAGAAGAATAATGGAAGGCAATCATCGGATGGGAATGGCTGTACTTGATTCTTCAACTGGCTCATTAGCTGAGTTTGCCTGTGAAGTGGAAATCACAGAGTGTGAACCACTTCCAGATGGTCGTTTTTATATAGAGATTGAAAGTCGCAGGAGATTTCGTATCATCCGGTCGTGGGATCAAGATGGGTATCGTGTTGCAGAGGTTGAATGGATACAGGATATTATGCCACCAGAAGGTTCAAGTCAAAGACTGACTGAATTGACGTATAATGCTGCCGAAAATGCTAGATCATGGATAGGAAAAGCTAAAGAAGCTGCTAGGCATGATCAAAGAAAACTCGAGAGACTCGCCAGTGTTGAAGTAATGATGCCCTCACTAAAAGACCCTGAGCGCTTTAGTTTTTGGGTCACTCAATATTCTTCTGCCTCATAA 1553 0.4198 MASSLSPSPFSLDQILREVDDFVLENKSEGLSWDTLHYVYELVQNGNAAFRENRMEEAINLYSRANNIKSGDPIILSNRSAAYIRISQYFMHRAPSSSERRPLSGLEPTTLAELGLKDAEKVVELQSNSAKAYLLKANALLLLEKYEKARDVILSGLQVDPFSNSLRASLQNLERVSSSSTGTSTHGHPERNDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDRGNRCPLCRTVLFISPRTCSISVTLKNIIQKNFPEEYAERKQEQDGLISAGVDLLPLFVMDVVIPCQRFPLNIFEPRYRLMVRRIMEGNHRMGMAVLDSSTGSLAEFACEVEITECEPLPDGRFYIEIESRRRFRIIRSWDQDGYRVAEVEWIQDIMPPEGSSQRLTELTYNAAENARSWIGKAKEAARHDQRKLERLASVEVMMPSLKDPERFSFWVTQYSSAS 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00554 451 Gene3D - 279 381 IPR046336 -
Pste2g00554 451 ProSitePatterns Zinc finger RING-type signature. 212 221 IPR017907 -
Pste2g00554 451 SUPERFAMILY PUA domain-like 281 412 IPR015947 -
Pste2g00554 451 SUPERFAMILY TPR-like 38 169 IPR011990 GO:0005515
Pste2g00554 451 SMART ring_2 197 234 IPR001841 -
Pste2g00554 451 SUPERFAMILY RING/U-box 191 260 - -
Pste2g00554 451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 275 IPR013083 -
Pste2g00554 451 ProSiteProfiles Zinc finger RING-type profile. 197 235 IPR001841 -
Pste2g00554 451 CDD RING-HC_LONFs_rpt2 194 238 - -
Pste2g00554 451 Gene3D Tetratricopeptide repeat domain 37 187 IPR011990 GO:0005515
Pste2g00554 451 PANTHER RING FINGER PROTEIN 127 31 446 - -
Pste2g00554 451 Pfam ATP-dependent protease La (LON) substrate-binding domain 281 449 IPR003111 -
Pste2g00554 451 Pfam Zinc finger, C3HC4 type (RING finger) 197 234 - -
Pste2g00554 451 SMART lon_5 280 451 IPR003111 -
Pste2g00554 451 ProSiteProfiles Lon N-terminal domain profile. 278 451 IPR003111 -
Pste2g00554 451 SMART tpr_5 39 72 IPR019734 GO:0005515
Pste2g00554 451 SMART tpr_5 130 163 IPR019734 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00554 183 238 C3H Transcription Factor Family AT1G74990 35.593 2.00e-09 54.3