LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste2g00553	GAAATTTGATAGCTTGAGAGAGAGATGGGTTTTTAGTTTTTTACTTGAGGGCTTGGTGATTGGTTCTTTTCCATGTTCCCCTTTCCGGGGATTCTTCTCATTTCCCCATGAATTTTCAAAATATCTTTTTGGGCTTTGGGCTTTGCTTTCTTTTGTGGTCACTGGCTCTCTCTCTCTCTCTCTCTGAAGCATGTGGGTTCCATGCTTTTGCCTATGAAGGAAATGTAAAACATCACCCTGCTGAGTTATTGATCTCCGGGCCTGACTTTTTGAGATGTGGTTTCTGAACCTCAGAACACACTGCAGAGCATGTCTAGTTTAGTTCTCTGTTTCATGTCAGCATATCCATTACATCCCTTGCAAATCAGGCTTCTTCCAATGCTTACCTTCTTCTAGGGTTCTCATTTCACACTCTGCCAAGGTGGAGGGACTTAACTGGCTCATGTAGGATTTGACTTGAGACCATCCTCCCCAGTAGAAAACAAAACAAAAAAAAAATGGAATCTGGAGGTAGGTTCTACTCAGTTGATGAGTTCAGATTGGACCCCAAATGGCTGATTGATCCTAAACATCTCTTTGTTGGGCCACTGATTGGAGAGGGAGCTCATGCCAAAGTCTATGAGGGAAAATATAAAAACCAAACTGTTGCTATTAAAATTGTACATAAAGGAGAAACTACAGAAGACATTGCCAAGAGAGAAGGGCGCTTTGCAAGGGAGGTGGCAATGTTGTCTAGAGTGCAACATAAGAACTTGGTGAAGGTGGGAATTTGGTTTAGGCTTTCCGAAATTCCTATACTTGTCTCTGATCTGTTGTATTTTGTTGAAGCAAAGATAAGTTTTATTGGTGCTTGTAAGGAGCCAGTGATGGTGATAGTCACTGAGCTGTTATTAGGAGGAACACTGCGCAAGTATTTGCTCAACATGCGCCCCAAATGCTTGGATAGACATGTTACCATTGGTTTTGCACTTGATATTGCACGTGCTATGGAGTGCCTGCATTCTCATGGGATCATTCACCGTGATCTTAAACCTGATAACTTGCTATTAACTGAAGACCAGAAAACTGTCAAGCTAGCAGATTTTGGTTTAGCAAGAGAAGAGTCACTAACTGAAATGATGACTGCAGAAACAGGAACCTACCGTTGGATGGCTCCAGAGTTGTATAGTACTGTCACCCTGAGGCAAGGGGAGAAGAAGCATTACAACCATAAAGTTGATGCTTATAGTTTTGCAATTGTGTTGTGGGAGCTCTTGCACAACAAAGTTCCTTTTGAAGGCATGTCAAACCTTCAGGCAGCATATGCTGCAGCCTTTAAAAATGTAAGGCCAAGTGCAGAGAATCTTCCTGAGGAATTGGCTCTAATTCTTACTTCATGCTGGCAAGAGGATCCAAATGCCAGACCCAACTTCACCCAGATAATTCAAATGCTTCTAAATTATCTTTACACTGTTACACCACCTGAACCCATGATTCCTGCAAGAATTTTTACTTCTGAGAACACTGTCTTGCCACCAGAATCCCCCGGTACTAGCTCCTTAATGGCAAAATGCGATGACACAGGCGATACGCCAAGAACAAAGGATGAAATCAAACCTAACGGTTTCCTTTGCTGCTTTAGTCAGTGTTATTAACGCCTGAAATCAAGTCTGAGTTAAAAAATGGCAAAAAAATGTTAGATAGAATCTAGTCCAAAGTGATCCTTTTGACAACTCGGTAAATGTTCAGATAATACTTTGCAATTCCAGTAAAATTTAGTTTTTGTTTTTTCCACAATCCCACCTAGCATGTTTTTTCATCTCAGATAGATGTATGCATAGGATATCTTTCATGCAACATTGGTAGGATTTGCACCTTGAGATTCATAATCATTGAATTATATCTAAAATTGAGTTTACTTTGTCCAAAGGGACCAGTACCTCCTTCAGTATCCTTGTCGAACCTCC	1946	0.4101	MESGGRFYSVDEFRLDPKWLIDPKHLFVGPLIGEGAHAKVYEGKYKNQTVAIKIVHKGETTEDIAKREGRFAREVAMLSRVQHKNLVKVGIWFRLSEIPILVSDLLYFVEAKISFIGACKEPVMVIVTELLLGGTLRKYLLNMRPKCLDRHVTIGFALDIARAMECLHSHGIIHRDLKPDNLLLTEDQKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELLHNKVPFEGMSNLQAAYAAAFKNVRPSAENLPEELALILTSCWQEDPNARPNFTQIIQMLLNYLYTVTPPEPMIPARIFTSENTVLPPESPGTSSLMAKCDDTGDTPRTKDEIKPNGFLCCFSQCY	378

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste2g00553	378	ProSiteProfiles	Protein kinase domain profile.	26	316	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste2g00553	378	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	21	312	-	-
	Pste2g00553	378	FunFam	serine/threonine-protein kinase HT1	133	333	-	-
	Pste2g00553	378	CDD	STKc_MAP3K-like	32	312	-	-
	Pste2g00553	378	Gene3D	Transferase(Phosphotransferase) domain 1	109	317	-	-
	Pste2g00553	378	Pfam	Protein kinase domain	31	310	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste2g00553	378	Gene3D	Phosphorylase Kinase; domain 1	15	102	-	-
	Pste2g00553	378	SMART	serkin_6	26	316	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste2g00553	378	MobiDBLite	consensus disorder prediction	340	361	-	-
	Pste2g00553	378	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	172	184	IPR008271	GO:0004672\|GO:0006468
	Pste2g00553	378	PRINTS	Tyrosine kinase catalytic domain signature	283	305	IPR001245	GO:0004672\|GO:0006468
	Pste2g00553	378	PRINTS	Tyrosine kinase catalytic domain signature	166	184	IPR001245	GO:0004672\|GO:0006468
	Pste2g00553	378	PRINTS	Tyrosine kinase catalytic domain signature	240	262	IPR001245	GO:0004672\|GO:0006468
	Pste2g00553	378	PRINTS	Tyrosine kinase catalytic domain signature	128	141	IPR001245	GO:0004672\|GO:0006468
	Pste2g00553	378	ProSitePatterns	Protein kinases ATP-binding region signature.	32	53	IPR017441	GO:0005524
	Pste2g00553	378	SUPERFAMILY	Protein kinase-like (PK-like)	17	340	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste2g00553	Pste-Chr2	5237314	5241337	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste2g00553	9	378	MAP Kinase Kinase Kinase	AT5G50180	75.676	0.0	570

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Pste2g00553		Pkinase	3.8e-49	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste2g00553	2	5237314	5241337	Pste2g00553	2	5237314	5241337	ECH