Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00550 TTGAAAGAAAACCCTGGCTGGTTCCATTCCTCATAGGGGATTAGCAACAGCAACAAAATGAGTGCTCCAATGGAGACGGAGCAGACAACCGACCAAAACGGCGACGCTTCCCGACACTCACTTCCAGAGGATAAAGTCCTTGTCCCTGTTGAGGTAACCCTAAAACCTTCTAGCACTGCTAAAATCGACCATGTCCGTTCTTCCGTTGAGGGGATGCTTGAAAAGAGGAGTTTGAGCTATATCGATGGACCCATTCCCGTCCCCCTTGACGACGCGTTTCTTTCTGATAATGTGCAAAGAATCTGCGTTTGTGGATGTGATACTGATGAAGGGACTCACAATGATAATGTTCTTTTGTTCTGGCAAGTCAAGCCTGTTGTACATGTCTTTCAGCTTAGTGAGCAAGGACCATGTGAGGATATAAGCTCTGATGGCCACTCTTCCAGCTTCAATGAATGGATTCTTCCTGCTAAAGAATTTGATGGCATGTGGGAAAGCTTAATATATGAATCTGGTCTAAAGCAAAGATTATTACGTTATGCAGCAAGTGCTTTGCTCTTTACTGAAAAAGGGGTTGATCCATTCCTTGTTTCATGGAATCGCATAATTCTGTTACATGGACCACCAGGGACTGGAAAGACGTCTTTATGTAAAGCATTAGCTCAGAAATTATCAATTCGATTCAATTCAAGATACCCACAGGCTCAGCTTGTTGAAGTGAATGCACATTCTTTGTTCAGTAAATGGTTCTCTGAAAGTGGCAAGCTGGTAGCGAAACTTTTTCAAAAGATTCAAGAAATGGTAGAGGAAGAAAGCAATTTGTGTGCTTATGATCCTGTAGATGAAGTCGAAAGCCTTGCTGCTGCTAGAAAAGCTGCTTTATCTGGTTCTGAACCTTCTGATTCTATCCGTGTTGTCAATGCATTACTAACTCAGTTGGACAAGTTAAAATCATCTCCAAATGTGATAATTCTAACCACATCCAACATAACTGCAGCTATTGATATTGCTTTTGTTGATCGAGCCGATATCAAAGCATATGTTGGTCCCCCAACTCTTCAAGCTCGGTATGAAATATTAAGGTCCTGCTTGCAGGAACTGATGCGTACAGGGATATTGACTAGTTTACAGGATTGTAAGAATGTCATGCTTCCAAATTACGCCAGTGCAAAGGATAAATTGAATGCTCCAGATTTTCAGGAGGGTGTTACATTCATGCAACTATGCAAGCGGCTACTTGAAACTGCTGAAGCATGTGAGGGAATGAGTGGAAGGTCTTTGAGAAAACTTCCATTTTTAGCACACGCTGCACTGACTAATCATTTTGATTGCAACCCTATTAAGTTCTTATGTACAATGGTAGAAACAGCAAAGAGGGAGCGTTCTGAGCTTCCAGACTAAAATAACTAAAATTTCAATTTAAAATGTGTAAATCAAAAGGGTAACGGTTGTGTCTACTGCATTTTAGTGCAATGTATGTTGATGCGGCAGAAATGTTTATTTATTCTAAGCCATTATCTAACAATACTAAATGGTTAATCTTAGAATAATGTTTGGAAAAGCAAT 1566 0.4049 MSAPMETEQTTDQNGDASRHSLPEDKVLVPVEVTLKPSSTAKIDHVRSSVEGMLEKRSLSYIDGPIPVPLDDAFLSDNVQRICVCGCDTDEGTHNDNVLLFWQVKPVVHVFQLSEQGPCEDISSDGHSSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLSIRFNSRYPQAQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEESNLCAYDPVDEVESLAAARKAALSGSEPSDSIRVVNALLTQLDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELMRTGILTSLQDCKNVMLPNYASAKDKLNAPDFQEGVTFMQLCKRLLETAEACEGMSGRSLRKLPFLAHAALTNHFDCNPIKFLCTMVETAKRERSELPD 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00550 447 Gene3D - 124 348 IPR027417 -
Pste2g00550 447 ProSitePatterns AAA-protein family signature. 303 322 IPR003960 GO:0005524|GO:0016887
Pste2g00550 447 MobiDBLite consensus disorder prediction 1 17 - -
Pste2g00550 447 SMART AAA_5 180 333 IPR003593 GO:0016887
Pste2g00550 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 416 IPR027417 -
Pste2g00550 447 Pfam ATPase family associated with various cellular activities (AAA) 184 330 IPR003959 GO:0005524|GO:0016887
Pste2g00550 447 CDD RecA-like_Pch2-like 130 329 - -
Pste2g00550 447 MobiDBLite consensus disorder prediction 1 23 - -
Pste2g00550 447 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 13 444 IPR044539 -
Pste2g00550 447 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 184 202 IPR001270 GO:0005524
Pste2g00550 447 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 299 313 IPR001270 GO:0005524
Pste2g00550 447 FunFam pachytene checkpoint protein 2 homolog 124 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00550 Pste-Chr2 5193917 5199529 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00550 184 358 Calmodulin-binding Proteins AT3G56690 28.249 3.06e-11 63.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g00550 2 5193917 5199529 Pste2g00550 2 5193917 5199529 ECH