Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00525 GTTAAAACAGATTTCCATTAACATCGAGTGATTAACACCTTGTGTAATTTAAAATAACACGTACCTAATAATGAAAAAAATCTGTGAAGTGTTGGGAAGCCCATAGGAAAAGCCCACGTGAGTAATGTAGATTTATGATATTTTTGTGAGGAAAGAGCAAAGCAAAACCCTTGTCCTGTGCGTCTTCTCCTCCCCCCTTATCCACACTCCTCTTCTTCATTTTGTTTTAAACCCTTCACTCACTCACACACACTTTCACTGCTTTCAACCCTCTCACCAATCACCATGGCCGAGTCATGCCTCCTCTCTTCTCATTCCTCACTCTTCCACAACGTAACCAAACCTCTTCTTTTCTCGCCCCCTTCCAAACCCCTCACACTCCATTTCCCCTGCCTCAACCCTTCCTCCTATCTCTCCCTCTCCACCCGAACCCACCGTTCCCCTGTTCTCCCTCTCGTCGCCCAAACTTCCGACTGGGCCCAACAAGAAGAAGACGACACCGACACCCTCCCAGACGAAACCCAAGCGGGCCTTTCCGATTGGGAGCCCAACGGCGAAGTCCCCGAAGATGACGCTTTCATTGAGCCGCCCGAGGAGGCTAAGCTCTTCGTTGGAAACTTGCCCTACGACGTCGATAGCCAGAAATTGGCCATGCTTTTCGAACAAGCCGGAACCGTTGAAATTGCCGAGGTTATTTATAACAGAGAAACCGACCAGAGTCGTGGTTTTGGGTTTGTAACCATGAGTACTGTTGAGGAAGCTGAGAACGCTGTTGAAAAATTCAACCGCTATGATTATGATGGAAGACAGTTGACTGTTAATAAGGCTTCTCCAAGAGGAACTCAGCCTGAGCGTCCACCTCGTCGTACCTTTGAGTCTACCCTATCAATCTATGTTGGTAATTTGCCATGGGATGTTGATAATACCAGACTGGAACAAGTTTTCAGTGAACATGGTAAGGTTGTGAATGCTCGGGTAGTCTATGACAGGGAGACTGGTCGATCACGTGGCTTTGGCTTTGTCACAATGTCTGATGAGACAGAAATGAATGATGCCGTTGCTGCTCTTGATGGTCAGAGTTTGGACGGAAGGACAATTAGGGTGAGTGTTGCTGAGGACAGGCCAAGGCGTAGCTCCTTTTAAGCGGTACCTCAAGTAGTTCCCCATTCAGCTGCTGGAGTTCTCTTGCATTTTTTGAATAGCTGAGGATATAGTGTCAAATTTTGTTTAAACAGGAAATTCCTTTCTTGGGGGCGCCAATTTCAGATTAGGTCCACCTATTTTGCTGTTATTAATTTAATATTCAGATAAAAGTAAGTTGTAATTCCCGACTCATGAGATTGGAAAAAAATGTACTTTGTTCATTTGTTGCCTTCTTTTGGGCTGTTTGTTATTACTATTTATGAAATGAAAAACGGGGAGGGGGGTTCTACCGTATAACTGG 1444 0.4543 MAESCLLSSHSSLFHNVTKPLLFSPPSKPLTLHFPCLNPSSYLSLSTRTHRSPVLPLVAQTSDWAQQEEDDTDTLPDETQAGLSDWEPNGEVPEDDAFIEPPEEAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAENAVEKFNRYDYDGRQLTVNKASPRGTQPERPPRRTFESTLSIYVGNLPWDVDNTRLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSDETEMNDAVAALDGQSLDGRTIRVSVAEDRPRRSSF 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00525 285 Gene3D - 190 285 IPR012677 -
Pste2g00525 285 MobiDBLite consensus disorder prediction 62 96 - -
Pste2g00525 285 CDD RRM1_PSRP2_like 106 185 - -
Pste2g00525 285 CDD RRM2_NsCP33_like 202 276 - -
Pste2g00525 285 Gene3D - 57 189 IPR012677 -
Pste2g00525 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 278 IPR000504 GO:0003723
Pste2g00525 285 SMART rrm1_1 201 274 IPR000504 GO:0003723
Pste2g00525 285 SMART rrm1_1 106 179 IPR000504 GO:0003723
Pste2g00525 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 272 IPR000504 GO:0003723
Pste2g00525 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 176 IPR000504 GO:0003723
Pste2g00525 285 SUPERFAMILY RNA-binding domain, RBD 190 283 IPR035979 GO:0003676
Pste2g00525 285 SUPERFAMILY RNA-binding domain, RBD 101 194 IPR035979 GO:0003676
Pste2g00525 285 FunFam 31 kDa ribonucleoprotein, chloroplastic 189 284 - -
Pste2g00525 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 183 IPR000504 GO:0003723
Pste2g00525 285 PANTHER OS02G0815200 PROTEIN 19 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00525 Pste-Chr2 4828156 4831428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00525 107 285 Eukaryotic Initiation Factors Gene Family AT3G16380 27.374 9.67e-13 66.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01962 6 9084892 9088659 Pste2g00525 2 4828156 4831428 ECH
Pste2g00525 2 4828156 4831428 Pste2g00525 2 4828156 4831428 ECH
Pste6g01962 6 9084892 9088659 Pste2g00525 2 4828156 4831428 PCT