Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00524 TGAGTATGACTTTGTGAGAGAGAAAGAAAGAGAGGTGCCATCATATATGTGAGTCAGTGTTATTGGTTTATTATTAATAAGTAGTGCCATAAGCCCAACTTTGTAGTTTGTACTGCAAAATCTGAAGCAACAAGGACAATTGTGGAAGAGTTTACAAGAACAGATCCTCTCACTCTCAGTGCACAACCAGAGAGAGACTTAATTTGTTCCTTATCCCCCATGTCTAAATATGAAGAGATAGCAGAATTAATATGGGAAAATGGCCAGGTATCCATGCATGGGCTTAGTGGGCTTCAGCCTACTACCACCCCTCAAGAAAAGCCCATACTGAGTAAGGCCCACAACACATTGGAGTCAATTGTTCAACATGCGACGTGGCATCGTCATCAACCGTCAAAATTCATCACTAGGGAAGACCATGCTCCAACTCGTAATGATAATAGTAAAAACTACTCCATTGATGCACCCTATAGTGAGGTTCAAACGGTGCCATCTTCGACGAGGAAGAGAACATGGTCCAACACTAACAACAACATGTTGGAAGAATGTGACATCCTCAGTGGTTGTGCTAGTGCTGGTGCCAACTTTTGTAGGGACAATGATACAACTATGGTGACATGGGCTTCTCTTGAATCTGGTCGAAGCTTGAAGACCATGGAGGAAGATGCAGCTTGTCACTGTGAATCGGAAATTCGAGAAAACCAATATGACACAAACAGTAAAGCAGAAGTTATAAGACAAAACAACTCAAAAAGACGAAGTAGAACTGCTGCTATTCATAACCAGTCAGAGCGGAAAAGAAGAGATAGAATTAATCAGAAGATGAAAGCCTTGCAGAGGTTGGTGCCTAATGCAAATAAGACTGATAAAGCTTCAATGTTAGATGAGGTGATTAACTACCTAAAGCAGCTCCAAGCACAGATCCAAGTGATGAACATGGCAAGCATGCCTCAAATGATGGTGCCATTGGCCATGCAACAACAGCTTCAAATGTCAATGTTAGCAAGAATGGGTGCTGCTGGGCTTGGCATGGGAATGGGCCTGGTGAACATGAACAACATAGCAGCCCAACCAAGTGGCCCAAGATCACTCCCCCAACTCATGCAACAAACAAGCACAGTAGGGTCAACTCCACCACCTGCCACTGCACCACTTTTTGTTGCCCCTTCCTTTATCATGCCTCCAATGATTCAACCACATATCAACCCTACTCCTCCAAAGCCCCAAGCTTCAATTAATATGGACATCATCACCAACATGGCAGCACTTTATCAACAACAGATGAGTAAGAACAATCATCTAGCATTGAGTAGCAGCATGTCTCAACCACATGCACCATGAGCAAGGTTATTAAGATCAAATCCAATTAACTATATGTGATAGAAGAAGCACTATATACACTTGTGATAGAAGAAGCACACATTATGGATAAGGGACAAAATGAAGTGGAATTATCAAACGTTTTGGGTTTAGATTAAGAACCCCAAATCAATGATTTGAGTCAAAAACTTTTGTTCAAACAATAAAGTATAGTGCTGCTATTATCTTTAATGTAAATACTAATCAAAC 1569 0.4136 MSKYEEIAELIWENGQVSMHGLSGLQPTTTPQEKPILSKAHNTLESIVQHATWHRHQPSKFITREDHAPTRNDNSKNYSIDAPYSEVQTVPSSTRKRTWSNTNNNMLEECDILSGCASAGANFCRDNDTTMVTWASLESGRSLKTMEEDAACHCESEIRENQYDTNSKAEVIRQNNSKRRSRTAAIHNQSERKRRDRINQKMKALQRLVPNANKTDKASMLDEVINYLKQLQAQIQVMNMASMPQMMVPLAMQQQLQMSMLARMGAAGLGMGMGLVNMNNIAAQPSGPRSLPQLMQQTSTVGSTPPPATAPLFVAPSFIMPPMIQPHINPTPPKPQASINMDIITNMAALYQQQMSKNNHLALSSSMSQPHAP 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00524 373 Pfam Helix-loop-helix DNA-binding domain 187 232 IPR011598 GO:0046983
Pste2g00524 373 Coils Coil 188 208 - -
Pste2g00524 373 Gene3D - 176 241 IPR036638 GO:0046983
Pste2g00524 373 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 182 231 IPR011598 GO:0046983
Pste2g00524 373 SMART finulus 188 237 IPR011598 GO:0046983
Pste2g00524 373 CDD bHLH_AtPIF_like 182 244 IPR047265 -
Pste2g00524 373 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 180 241 IPR036638 GO:0046983
Pste2g00524 373 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 8 364 IPR031066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00524 Pste-Chr2 4827391 4836700 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00524 6 244 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 37.970 8.71e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste2g00524 HLH 5.1e-13 No_clan