Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00520 TTCACTTCAAAGTTCAAATCAAACCCCACTCTGCTCCGTTCCCATGGAACTCACTGAAGAACAACTACGCCAAGTAGAAGCCAACCGCGTCGCCGCCATGGCCAAACGCAAAGCCTTCTTAGAATCCAAAGCACAACAATCTCACAACGAAGCAGAAAACCCCCAAAATCCTTGGCACCTTTTCAAGTGCCAAAAATTTCCTCTTTCCCCGAAACCCCAACCCCCAAAATTCCTCTGCAGACTCGAAATATGTTCCCCCGATTCCTTCTCCGTAACCCCTCTGCCTCTCCCCTCTTTCCCCTTCCCCGGTCACCAACATTGCCTCAATCTCTTAAACTCCACTCTCTCTAACGTGATGCTATCGCATTACACGCAGAGCAGTGAGGGAGAGAAGGTGAGTGTGTTTAAACTGGCTGAGTATCATGCTGTATTGAAGCAGTTAAAGGGTGCTGCGGAGATGCTTCAGGTGGAGGAGATTCCCTGGGCGACGTTCAATGTTGTTGAGCGTCTCTCCCATTCGTTTGTGGCGGAAAGGTGGACGCCGGTGCTGCCGGAGCATTTGGCCGATGATGAGGTGGAGCGCTTGATTGCTAAGCTTCCAAGGACTCTCCTTGATGTTTTGTTGCCTTTCCAGCATGAGGGGTTGAGGTTTGCTTTGCGGAGAGGTGCAAGGTGCCTTATTGCTGATGACATGGGGCTCGGGAAGACGCTACAGGCTATTGCTATTGCAGGGTGTTTTCTGGAGGAAGGATCTATACTTGTTGTTTGTCCTGCTGTGTTGCGGTATTCATGGGCAGAGGAGTTGGAGCGCTGGCTTCCTTTCTGCTTACCAGCTGATATACATCTTGTTTTTGGACATCAAGACAACCCTATATACTTAAAAAGAAGCCCCAAAGTGGTGGTTATTTCTTATACCATGCTTCATCGACTAAGGAAGAGCATGCTTGAGCGAGAATGGGCTCTCCTGATTGTTGATGAATCTCATCATGTGCGATGTACAAAGAAAACAGAACCAGGAGAGATACAAGCTGTTCTTGATGTGGCTTCGAAAGTCAAGCGTATAATTCTGCTATCCGGAACACCTTCCCTGTCAAGGCCCGGCTTGCTGGGGAAGACTAAATACAAGTTTGCAAAAACTTATTGCGATTTAAAATATACCAAAAGCTTCCAAGGAAAATATTTTGCGGATTATACAAAGGGCGTGCGCTTGGAAGAGTTGAATGTGTTGCTAAAACAAACTGTTATGTTACCTCCAAAACGTCGACAAATTATAAGACTATTGATAAAGAGATCAGATATAGTTGCTGCAAAAACTGCAGTTGGGGTATTCATTATTGATGCCTCTGAAAAGGAAAGTGAAGATCTTCCTTTGGAAAATTTGGATGAACCTGATGGAAAGCTTTCTTATCAAGAGCTCGGAATTGCAAAGCTTTCTGGTTTTCGTGAATGGCTTGCCCTCCATCCAATCATTGCTGGATCAGAGAATGCTTCCAAAATGATAATTTTTGCTCATCACCATAAAGTTCTTGACGGAGTACAGGAGTTTATATGTGAGAAAGGGATAAGTTTTGTGCGAATTGATGGACATACTCTTGCCAGAGATAGGCAATCAGCAGTAGTTTCATTTCGTTCATCGCCAGAGGTTAAAATTGCAATAATAGGTATTCTAGCAGCAGGTTTTGGACTTGATTTTTCAACAGCACAAGATGTTGTGTTCTTGGAGTTACCACAGTGCCCCACTCTAATGCTCCAGGCTGAGGATAGAGCTCATCGTCGAGGACAAACAAATGCGGTTAATGTATACATATTCTGTGCAAAGGATACCTTGGATGAATCACATTGGAAAAATTTGAACAAAAGTTTGCAACGTGTTTCATGTACAACAGATGGCAAATATGATGCGATGAAAGAGATAGAGGTTGAAGGTATTTCGTATTTAGATTCATCTTTGAAAAGTGGTAATAGTGTAGAGCAATCTGCTTGCAAAGATTCAGTAGGTGAAACACAATTGGGTAAGCAATCCTCTGCGGTAAATTCACATGAATTAGAAGCAACTCAAGATGATAAATCTGATGAGGGGACTCCTTTTGCTAATAACACAATTCAGAGTTCTAATATTATGGCTGATAATGTTTCCTGCCAACATTTAAGCAAGGCTTCAGTTCTGGATGGTACTTGTGATGATGTTTCTAATGCTGCAGAGAAATGCCTTGAAATTGAAAAGAGTTCTGAATTCAGAGATCAGGTGCAGGATATGAAATCAATTTTGACAATAGAAGCAGATGTCAACCATTCTGTTAATCCGGTTGAAGCTGATAGACATTGTTCTAATCAAGTGAGCCCATACACTGGAAGGATCCACTTGTATACTTGCATTTTGGGTACTGATAAAAGACCACAGCCACTTTTTGAAAATTTTCGACCAGAGGAACTTGAGTTGTTAAGTTCTGTTGCTGATGATGAGAATCAGGCTCATGATGAGAAACAGGAAATAGAGTTTGTATCTGTCAAGGACAACCCTGCCTATAGGCATGCTCTTATGGCTTTTGCGGAAGAGTGGAAGAACTTGAGACCAATTGAACGAAGGAAGTTACTTGGAAAACCATTACAACTTCCTTTGGCTGTTGAGTTATGCTACTTGATTGAAAGCAGTAACCACAACAACAAGGGATTATTAAATGGTGGAAGTAAAAGACGCAAGACTCCCTTAACGGAGATTAGCTATCCTTTACCATCAGAAGCTGTTTGGAGAAAGGTTTATCTGCGAAGTGGCCTTGGTAAGAAGGAAAAGGAATACACTCAAGGCTGGAGTGTGTCAGATGAGCCACTCTGTAAGCTTTGTCAAAAGCAGTGCTTGGGTAACAATGCCAAGACACCTGAATTTTTTGAAGATCTATTTTGTAACCTTGTCTGCTATGAGGAGTATCGAATGAGAACTAGCAACAGATTCATCCGTGAGGAGCTTTTCAAAATTGAACATGGTGTGTGCACAAACTGCCAATTGGACAGTCATAAGCTAGTGGAGGATATAAGACCTTTGTCATTGGAAAGACGGCGAGAGTACATAGAGAAAGTAGCACCAAATGTTGCTAAACGGAAGAAAATGCTTGAGAAGCTTGTCAATGAACCAAGTGAAGGCAACGCATGGCATGCTGACCATATTGTTCCAGTATATCAAGGAGGAGGTGAATGCAAGCTGGAAAATATGAGGACTCTGTGTGTGGCCTGTCATTATGATGTTACTGCCGCACAATGTGCTGAACGACGCATAGCAAGAGCAAATGCCAAGAAACAACTTAAAGCATTAATGAAAAGCATGAAAAATGGTAGTAAGGATGCTGCTCCAAATAACATTAAGGAACATAGGCTTCACGAGGAAGAAGGGAGTATAGTTGAAGATGAGCTTTTACTCGAGGTTCCTGGCAGTGCCTATTCTTTAGCAACAGGCTAATGAAGTGGAGAAGCAGCATGGAAGGGATTGCAAACTACAGGGAATTTCC 3500 0.4274 MELTEEQLRQVEANRVAAMAKRKAFLESKAQQSHNEAENPQNPWHLFKCQKFPLSPKPQPPKFLCRLEICSPDSFSVTPLPLPSFPFPGHQHCLNLLNSTLSNVMLSHYTQSSEGEKVSVFKLAEYHAVLKQLKGAAEMLQVEEIPWATFNVVERLSHSFVAERWTPVLPEHLADDEVERLIAKLPRTLLDVLLPFQHEGLRFALRRGARCLIADDMGLGKTLQAIAIAGCFLEEGSILVVCPAVLRYSWAEELERWLPFCLPADIHLVFGHQDNPIYLKRSPKVVVISYTMLHRLRKSMLEREWALLIVDESHHVRCTKKTEPGEIQAVLDVASKVKRIILLSGTPSLSRPGLLGKTKYKFAKTYCDLKYTKSFQGKYFADYTKGVRLEELNVLLKQTVMLPPKRRQIIRLLIKRSDIVAAKTAVGVFIIDASEKESEDLPLENLDEPDGKLSYQELGIAKLSGFREWLALHPIIAGSENASKMIIFAHHHKVLDGVQEFICEKGISFVRIDGHTLARDRQSAVVSFRSSPEVKIAIIGILAAGFGLDFSTAQDVVFLELPQCPTLMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNLNKSLQRVSCTTDGKYDAMKEIEVEGISYLDSSLKSGNSVEQSACKDSVGETQLGKQSSAVNSHELEATQDDKSDEGTPFANNTIQSSNIMADNVSCQHLSKASVLDGTCDDVSNAAEKCLEIEKSSEFRDQVQDMKSILTIEADVNHSVNPVEADRHCSNQVSPYTGRIHLYTCILGTDKRPQPLFENFRPEELELLSSVADDENQAHDEKQEIEFVSVKDNPAYRHALMAFAEEWKNLRPIERRKLLGKPLQLPLAVELCYLIESSNHNNKGLLNGGSKRRKTPLTEISYPLPSEAVWRKVYLRSGLGKKEKEYTQGWSVSDEPLCKLCQKQCLGNNAKTPEFFEDLFCNLVCYEEYRMRTSNRFIREELFKIEHGVCTNCQLDSHKLVEDIRPLSLERRREYIEKVAPNVAKRKKMLEKLVNEPSEGNAWHADHIVPVYQGGGECKLENMRTLCVACHYDVTAAQCAERRIARANAKKQLKALMKSMKNGSKDAAPNNIKEHRLHEEEGSIVEDELLLEVPGSAYSLATG 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00520 1135 CDD SF2_C_SNF 461 590 - -
Pste2g00520 1135 Pfam HNH endonuclease 1033 1064 IPR002711 GO:0003676|GO:0004519|GO:0008270
Pste2g00520 1135 Gene3D - 192 355 IPR038718 -
Pste2g00520 1135 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 471 625 IPR001650 -
Pste2g00520 1135 Coils Coil 1 21 - -
Pste2g00520 1135 Pfam Helicase conserved C-terminal domain 476 579 IPR001650 -
Pste2g00520 1135 SMART helicmild6 496 579 IPR001650 -
Pste2g00520 1135 Gene3D - 958 1094 - -
Pste2g00520 1135 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 303 632 IPR027417 -
Pste2g00520 1135 Gene3D - 413 675 IPR027417 -
Pste2g00520 1135 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 202 365 IPR014001 -
Pste2g00520 1135 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 367 IPR027417 -
Pste2g00520 1135 CDD HNHc 1027 1067 IPR003615 -
Pste2g00520 1135 MobiDBLite consensus disorder prediction 650 681 - -
Pste2g00520 1135 Pfam SNF2-related domain 209 347 IPR000330 GO:0005524|GO:0140658
Pste2g00520 1135 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 1084 - -
Pste2g00520 1135 SMART ultradead3 189 380 IPR014001 -
Pste2g00520 1135 MobiDBLite consensus disorder prediction 650 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00520 Pste-Chr2 4779014 4794907 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00520 484 597 RAD5 or RAD16-like Gene Family AT1G11100 38.596 2.40e-15 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pste2g00520 SNF2_N 1.9e-16 CL0023