Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00495 TTCTATTTCTCTCTTTTTCTTGACAAAGAGGACCCAAACATGACAAACACTCTGCTTTCTTTGCTTTTCTTCCTCTTCTCCCTTCTCCCTCCAATCCTCATTTCCTCTTCACCACTTCATAATCCTCAAGAAGTCGTACAAGAGGTCAACAGGAAGATTAATGCGACTGCAGGTAGGCATAGGAGGAACTTGGGGTACCTCTCATGTGGTAGTGGAAACCCCATTGATGATTGTTGGAGATGCGACCCGAATTGGGAGCAGAACAGGCAGAGGCTAGCAGACTGTGCAATTGGGTTCGGGAAGAACGCGATGGGTGGGAGGGATGGGAAGATTTACGTGGTGGACGACGACGGCGACGACGACCCAGTGAACCCTAAACCGGGCACACTCCGGCACGCCGTGATCCAAGACGATCCCCTATGGATAATCTTCAGCAGAGACATGGTGATCCAGCTGAAGGAGGAGCTTCTGATGAACTCCTTCAAGACCATCGACGGCAGAGGCGCCAGCGTGCACATTGCAGGGGGTCCCTGCATCACCATACAGTACGTCACCAACGTCATCATCCATGGGATTCACATCCACGATTGCAAGCAGGGCGGCAACGCTATGGTGCGGGACTCCCCACGCCACTACGGCTGGAGAACCGTTTCGGACGGCGACGGCGTCTCCATCTTTGGAGGGACTCATGTCTGGATCGACCATTGCTCCTTGTCTAACTGCAACGATGGCTTGATCGACGCCATCCACGGCTCCACCGCCATTACCATCTCCAACAATTACATGACGCACCATGATAAGGTCATGTTGTTGGGTCACAGCGATTCTTACACCCAAGACAAGGACATGCAAGTCACCATTGCCTTCAATCACTTTGGTGAAGGCCTTGTTCAAAGGATGCCCAGGTGTAGACTTGGGTATTTCCATGTGGTGAACAATGATTATACTCACTGGGAGATGTATGCTATTGGTGGAAGTGCCAATCCAACCATCAACAGCCAAGGCAACAGATTTGTTGCACCCGATGACAGATTCAGCAAAGAGGTGACAAAACGTGAAGATGCAGCAGAGAGTGAATGGCAGAGTTGGAATTGGAGGTCAGAAGGGGATATGTTAGTAAACGGTGCGTTTTTTACTGCATCGGGAGCTGGAGCCTCCTCTAGCTATGCGAGGGCTTCTAGCTTAAGTGCAAGACCATCTTCCCTTGTTGGTTCCATAACAACAGGTGCTGGTGCACTTACCTGCAAGAAAGGTTCTCCATGCTGACAATGACTCATCAGACATCTATTTCTGCTTCATCCATTCCTTCCCAAAAGGAACTTCACCAAAATATTGATACCTTCAAAAAGAAAAGGGAGGGAAAAGAGCTAGTGTATTGATCTCTAGCTTTCCATTTACTTTTCCTTGCATACATTTCCATATATTTTCCCCCGCTTTTTTGGGTTTCTTAGGTTGTTTTCTGCTGTTTGTCTTTTCTTTTCAATTTTGAGTTGCTCATCATTACAACCTCCACCTGTTTTCTAAGAGAAAAACAAGTGCAGAAGAGTTGATATTATTGTTATTATAATACAAAGCTTCTAGCTTCTATATTAC 1593 0.4746 MTNTLLSLLFFLFSLLPPILISSSPLHNPQEVVQEVNRKINATAGRHRRNLGYLSCGSGNPIDDCWRCDPNWEQNRQRLADCAIGFGKNAMGGRDGKIYVVDDDGDDDPVNPKPGTLRHAVIQDDPLWIIFSRDMVIQLKEELLMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGTHVWIDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKREDAAESEWQSWNWRSEGDMLVNGAFFTASGAGASSSYARASSLSARPSSLVGSITTGAGALTCKKGSPC 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00495 408 Gene3D - 59 401 IPR012334 -
Pste2g00495 408 Pfam Pectate lyase 144 325 IPR002022 -
Pste2g00495 408 PANTHER PECTATE LYASE 18-RELATED 27 406 IPR045032 GO:0030570
Pste2g00495 408 PRINTS Pollen allergen Amb family signature 308 327 IPR018082 -
Pste2g00495 408 PRINTS Pollen allergen Amb family signature 206 227 IPR018082 -
Pste2g00495 408 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Pste2g00495 408 PRINTS Pollen allergen Amb family signature 350 374 IPR018082 -
Pste2g00495 408 PRINTS Pollen allergen Amb family signature 379 402 IPR018082 -
Pste2g00495 408 PRINTS Pollen allergen Amb family signature 82 99 IPR018082 -
Pste2g00495 408 PRINTS Pollen allergen Amb family signature 106 131 IPR018082 -
Pste2g00495 408 PRINTS Pollen allergen Amb family signature 142 158 IPR018082 -
Pste2g00495 408 SUPERFAMILY Pectin lyase-like 41 402 IPR011050 -
Pste2g00495 408 SMART amb_all 134 331 IPR002022 -
Pste2g00495 408 FunFam Pectate lyase 59 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00495 Pste-Chr2 4565004 4567260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00495 1 408 Polysaccharide Lyase AT5G63180 77.859 0.0 654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g00495 2 4565004 4567260 Pste2g00495 2 4565004 4567260 ECH
Pste6g01928 6 8924514 8926768 Pste2g00495 2 4565004 4567260 ECH
Pste7g02355 7 22237761 22239577 Pste2g00495 2 4565004 4567260 ECH
Pste2g00495 2 4565004 4567260 Pste6g01928 6 8924514 8926768 ECH
Pste6g01928 6 8924514 8926768 Pste2g00495 2 4565004 4567260 PCT