Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00488 ATGATGGATGGGCGGCGGCATTCAGTTGATATTCCAATTTCTAAAACTCTTGTGGCACTGAGGAGAGTCAGGTCATTGAGGGATCCATCAACTAATTCTATGAGCAAACTCTCTTCTTTGGTTGATAATGTGAACTGGGAAAACGGTTCTGGTAATGATATTTCCCTGCGGTTTTCAGATGCTGCTCGTCCATGTGATTCTGATGATAATGCTGCTCTCAGATCAAGGAATTTAGTCTTTAAGGGACAAAGGGTGCAGGATGAGGATGATTTTGTATTGAATTGTGGCCCCTTGAACTCAAGGTTGAAGCCTAGTGGGATGTCTTGTAAGGATGGCCGCCAAGATGATGCATTGGATTACTCTAAGCCTAATGTGCCCGCCATTTCTGGAAAATCACCAAGTGAAAGCTGTGGTAGCAACCATGGGGGTAAAGGATTGGACTTGGCTTGCATTGTGCTTCCAAGTAATAATTTCAATGATGGGGATTCATGCTATGTAGCAACTGCTAGATCTTCTCAATTAGGGAGAATAGATTGCTCTAAGCCGGTCAAAAAGTCTCTACGCAAGAATCAAGTAAAACCATCAGAGGTTGTAGGCAGTATTGCTAGCCTTGTAAGCAGTCCATGCCCTTCTGGCTATGATGCTTTGTCGCCATACAGTGCTTCGGTAGATATAAGTCAAGATGTTGATATCTTATATAACAATGATAATGGATGTGGAATAAGCTGCTGTTGGTCAAAATCACCAAGGTTTAGAGAATCAAATCTATATGGTGAGATAGAAGACCGTCCCTTGATATCTCACCGTGTTGATGAGACAGATCTTCATGCACTCAGAAGCATGAGACACAATGGTGGGGGGCTTAGTCCAAATTTGGAAACTCCTAGAAGTTTGTCTATGAAATTCAGGCCTAAATCATTTACTGATTTGGTGGGACAAAATGTGGTTGTAAGGTCTCTTGTGGGTGCCATTTCCAGAGGAAGGATAACATCATTTTATCTCTTCCACGGTCCACGTGGTACTGGCAAGACATCTGCCTCTAGGGTATTTGCTGCTGCACTGAATTGTCTCTCTGTTGAGGAGCAAAGGCCATGTGGTCTTTGCAGAGAATGTGTTCTATTATTTTCTGGAAGAAGTAAAGATGTTAAGGAAGTCGATTCTGTGAGAATCAATCGTACAGACCAGGTTAAATCCCTTGTTAAGAATGCAAGCATCCCTCCTGTTTCCTCACGTTTTAAGGTTTTCATTATTGATGAGTGCCAGCTATTGAATGGAGAGACATGGGCAAGCATTTCAAATAGCCTAGACAATCTTTCTCAACATTCAGTTTTTGTGATGATCACTCCTGATTTGGATAAGCTTCCTCGATGTGCAGTTTCCCGGGCTCAGAGGTATCACTTTCCCAAGGTTAAAGATGCTGATATTATATGCAGATTGGAAAAAATTTGTGCCGAAGAAGGTCTTGATTTTGAACAGGATGCTTTGGACTTTATTGCTGCAAAATCATGTGGTTCTGTTAGAGATGCAGAAATGATGCTTGATCAGATGAGTTTGCTTGGTAAAAGGATCAATATTTCTTTAGCTTACGAACTTACTGGGATCGTTTCTGATGACGAGTTGCTGGATTTGCTGGATCTGGCTTTGTCATCTGACACTTCCAATACAGTTATAAGAGCTCGAGAGTTGATGAGATCAAGGATAGATCCGTTGCAACTCGTATCTCAGCTTGCAAATCTCATTATGGACATCCTCGCAGGGAAATGTGAAAATGGTGGTTCTGAAGTCAGAATTAGATTTTCTAGGAGATACACATCGGAAGCTGATCTACAGAAACTAAATAATGCATTGAGAGTACTTTCTGAAACTGAGAAGCAGTTAAGAATATCGAAGAATCAAACAACATGGTTCACGGTAGCTCTCCTTCAGTTAAGCTCTATAGATTATCAATCTGTGGATGCAAATGATACCAAACTGAGTCTGAGAGATGCATGCAATGGAGGGCAAAGCTTGGAACATTTTGCTACTGGCCTGTGTGATAACAAGTCATACAGATTAGGAGTGCCGGAGGATCATAAAGGAACATTGGATTCCATTTGGTTTAAAGCTACAGAGATGTGTCATTCTAGTCAGCTAAAAACTTTTCTCAAGAAGGGGAAGTTATCTTCACTTCATGTTGATCGCAGTACAACTTGTCTTGCTATTGCCGAGTTAGAGTTCCACAATCGCCACCATGTATCTAAGGCTGAGAAATCATGGAAGGTGATTGCGAGTTCCTTGCAGTTATTATTGGGTTGCAATGTTGAGTTGAGAATTACCTATGCACCATGTTCTTCTGATTCCAAGTATGCCAAACTGAAGAGATCATCTTTCAGTATCTTCGGCTGTTCACGCAGAATTCGACAACAGAAGTCCTTATCATCTAATGAACAACGAAGTGAATCAGATTATGCGGACTACACCTCTGAAAATCCCATGATGAAGGGTAGAACTTCTACCTCTGATTGTGGAATGGATGTAGTAATGGCATTGAGGAGTTGTGAAGGGAATTTACTGAGCTCGGGAGAAAGATATTTGAATATGCCAGTTCAAGAGACAGCATGTGCTGGCGTGGATTCTACTAAGGTAGAGGGATACAACTATGCACATCTTGATCCATCAATGCTTGATTCAGATAATAATCACTCTAACTGTTTTCCGAGAACTCTCTGGCTTCAAAAGAAGTTCCGTTCTTCAGATTCATCCAAGTTCACTTTTCAGGGTATTCAACAACAGAAAGATTTTGTTATATCTGTCCCGAAGTGTACATGTTCTGGGACATATACCTATGCTAACGAACCATGCATATCAAAACAACTGCACCAAAGTGTCTGAGAAAAAGTAGGTAGGCTTGTTATGCAGTTTTCTGCTAATCTACTCTTTTGCTTTGTTATAATTGTTCAGACTACAGTTATATAGTGATAACCTAGCATATAGTTGGATAGAATGAACTAAATTTTTAATTTCATGTGCTTTGATTCAGAAACACCAAGATTGAT 3035 0.4066 MMDGRRHSVDIPISKTLVALRRVRSLRDPSTNSMSKLSSLVDNVNWENGSGNDISLRFSDAARPCDSDDNAALRSRNLVFKGQRVQDEDDFVLNCGPLNSRLKPSGMSCKDGRQDDALDYSKPNVPAISGKSPSESCGSNHGGKGLDLACIVLPSNNFNDGDSCYVATARSSQLGRIDCSKPVKKSLRKNQVKPSEVVGSIASLVSSPCPSGYDALSPYSASVDISQDVDILYNNDNGCGISCCWSKSPRFRESNLYGEIEDRPLISHRVDETDLHALRSMRHNGGGLSPNLETPRSLSMKFRPKSFTDLVGQNVVVRSLVGAISRGRITSFYLFHGPRGTGKTSASRVFAAALNCLSVEEQRPCGLCRECVLLFSGRSKDVKEVDSVRINRTDQVKSLVKNASIPPVSSRFKVFIIDECQLLNGETWASISNSLDNLSQHSVFVMITPDLDKLPRCAVSRAQRYHFPKVKDADIICRLEKICAEEGLDFEQDALDFIAAKSCGSVRDAEMMLDQMSLLGKRINISLAYELTGIVSDDELLDLLDLALSSDTSNTVIRARELMRSRIDPLQLVSQLANLIMDILAGKCENGGSEVRIRFSRRYTSEADLQKLNNALRVLSETEKQLRISKNQTTWFTVALLQLSSIDYQSVDANDTKLSLRDACNGGQSLEHFATGLCDNKSYRLGVPEDHKGTLDSIWFKATEMCHSSQLKTFLKKGKLSSLHVDRSTTCLAIAELEFHNRHHVSKAEKSWKVIASSLQLLLGCNVELRITYAPCSSDSKYAKLKRSSFSIFGCSRRIRQQKSLSSNEQRSESDYADYTSENPMMKGRTSTSDCGMDVVMALRSCEGNLLSSGERYLNMPVQETACAGVDSTKVEGYNYAHLDPSMLDSDNNHSNCFPRTLWLQKKFRSSDSSKFTFQGIQQQKDFVISVPKCTCSGTYTYANEPCISKQLHQSV 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00488 956 CDD HLD_clamp_pol_III_gamma_tau 470 533 IPR045085 -
Pste2g00488 956 Pfam DNA polymerase III, delta subunit 312 470 - -
Pste2g00488 956 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 520 IPR027417 -
Pste2g00488 956 Coils Coil 609 632 - -
Pste2g00488 956 FunFam DNA polymerase III subunit gamma/tau 471 533 - -
Pste2g00488 956 MobiDBLite consensus disorder prediction 803 830 - -
Pste2g00488 956 NCBIfam DNA polymerase III subunit gamma/tau 297 643 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Pste2g00488 956 Gene3D - 291 468 IPR027417 -
Pste2g00488 956 SUPERFAMILY post-AAA+ oligomerization domain-like 540 642 IPR008921 GO:0003677|GO:0006260
Pste2g00488 956 Gene3D - 471 533 - -
Pste2g00488 956 Gene3D - 534 647 - -
Pste2g00488 956 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 298 719 - -
Pste2g00488 956 MobiDBLite consensus disorder prediction 803 831 - -
Pste2g00488 956 FunFam Protein STICHEL-like 1 isoform C 534 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00488 Pste-Chr2 4467535 4471462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00488 288 535 Core DNA Replication Machinery Family AT1G21690 25.000 1.10e-12 68.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g00488 2 4467535 4471462 Pste2g00488 2 4467535 4471462 ECH
Pste6g01913 6 8840417 8846417 Pste2g00488 2 4467535 4471462 PCT