Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00478 GAAAAGGCAATGGCATTTGTACTGGAGGAAGCACAGAATAAAAGCACCCAAGTCACATGTTTCTACTACTTACTCTACTTAATTCTACTAACCCCTGCCCCTGCTCCTAGTGCTGCTTCATTCCTCTGCCCCAAATTTTTTTATTCACTCTCCCACATCACTCACCATTTTCCTTCCTCTGGAAACAGGGGAAGAGGCACAAAAGAAGGTGGGAGGCAGAATCTGATTAACACGCTGCGTAGCCACAGAAAATCAATAATGGGACTAGGTTCTGAAGGAAACGGTGACGTTTTACCATGGCTGAAATCGCTACCCGTGGCCCCGGAGTACCGGCCAAGCGCGGCGGAGTTCCAAGATCCTATTGGCTACATATTCAAGATCGAGAAGGAAGCTTCCAAGTACGGTATCTGCAAAATCATCCCTCCATTCCCACCTTCTTCGAAGAAAACCGCCATCGCCAACCTCAACCGATCACTCGCCGATGTAGGTTCTACATTCACCACGCGCCAGCAGCAGATCGGGTTCTGCCCCCGCAGGCCCAGGCCCGTCCAGCGGCCCGCCAAGTCCTTCGAGAAGACATACCTAAAACGGCATGCTAAGAAGGGCTCGGGCTCGGGCTCGGGCTTGGGCCCGCTGGAGACAGAAACGCTTTTCTGGAAGGCCACTCTGGACAAACCCTTCTCCGTGGAATACGCGAACGACATGCCGGGCTCCGCGTTTTCCCCGAAATGCCGGCACACAGGGGATCCCAGCTCCCTGGCGGACACTCCGTGGAACATGAGAGCTGTTTCTCGGGCCAACGGCTCTCTCTTGCAGTTCATGAAAGAGGAAATTCCTGGCGTTACTTCTCCGATGGTTTACGTGGCCATGCTCTTCAGCTGGTTCGCTTGGCACGTCGAGGACCACGACTTGCACAGCTTGAACTACCTCCACATGGGCGCCGGCAAAACCTGGTACGGCGTTCCTCGCGACGCCGCCGTCGCATTTGAGGAAGTCGTTAGGGTTCACGGCTACGGCGGCGAGATTAACCCCCTCGTTACTTTTGCCATTCTTGGTGAGAAAACCACAGTGATGTCGCCTGAAGTATTTATTAGTGCAGGTGTTCCATGCTGCAGATTAGTACAAAATGCTGGGGAATTTGTTGTGACATTTCCAAGGGCCTATCACTCAGGGTTTAGTCATGGTTTTAATTGCGGAGAGGCAGCAAACATTGCGACACCAGAGTGGCTGAGGGTTGCTAAAGATGCTGCTATCCGGAGGGCTTCATTAAATTATCCTCCCATGGTTTCACATTTCCAATTACTTTATGACCTTGCCTTAGCTTTGTGTTCTAGAATTCCTGTGAGCATCAGTGCTGAACCTCGTAGTTCTCGCCTTAAAGATAAGAAGAAAGGTGAAGGGGAAACTGTAATTAAAGAACTATTTGTCCAAGATGTGTTACAGAACAATGATCTGCTTCATATACTTGGCAAAGGATCTGCTGTAGTACTTCTTCCTCGTAGTTCTGTTGACATTTCTGTTTGCTCAAAATTACGTGTTGGATCCCAACAATCCGTCAATGTAAGAAATTCTGAGGGATTGCATTCCTCAAAAGGTTTTGTTTCTGATGATCTGGTATTCAACAGGAGTCAAGGAATCAGGCACGAAAATCGTTTCTATTCTGTGAAAGACAAGTTCACTACATTATGTGAAAGGAACAAGATTTCCTCTTTTGATGTAAATGGTAACATAAGCACTTCAAGTTCTAAGCCACTTCAAAGAGACACTGAAAGAGAAACTAGTCAAGGAGATGGGTTGTCAGATCAGCGACTGTTTTCATGTGTAACATGTGGAATATTAAGCTTTTCCTGTGTTGCTGTTGTACAGCCTAGAGAAACAGCATCTAGATATCTTATGTCAGCTGATTGCAGCTTCTTTAATGATTGGGTTGTTGGTTCTGGAGTATCTAGCAATAAACTTACGATTGCCCACGAAGATGCAAGATGGAAGAAAAAAAATGTCCAAGATGATATACATGATGTTCCTGTACAGTCTTCTTGGGAGGCTTTAAATACAGAAAGTGAAAAAGGCAATACAGCTCTTGCATTATTGGCTTCAGCATATGGTAATTCTTCTGACTCTGAGGAAGATCCAATTGCAGATGAGCGTCGTGAATCAAATTTGATAAATTCTGCTTCAGAAAGTTTACTTTCTCATGCTCAAGATTCCCATGCTAGTCCCATGACTGCACTTGATAGGGGAGATGATATGCCTTCAAAGAGTACCAGTTGTGAGGATTTTATGCATCATAGATTTGAGTATAATTTGAGTCATCAGTCTTTAGACCATTCTTTAGAGAAAGAGGATTATAATATCAAATCAGGAGTAACATTTGAAAATATGAGGATGGTGCCTAATTCCATCTCTAATTGTTCCCAAGACACTCATGATGCTGACAGGTCATTGTCTAACAGGTCTATGATTCCCTTTGATAGTAAAAATACTTCTCTGGTGCTACAATCTGATGAAGACTCGTCCAGAATGCATATTTTTTGTCTAGAGCATGCTGCAGCTGCAGAGCAGCAACTTCGCCCTATTGGTGGAGCCCACATATTGCTCCTATGTCATCCAGATTATCCCAAGATAGAGGCTGAAGCAAAAATGGTGGCAGAAGATTTGGGGATTGATTACATGTGGAAGAATATTGCATACAGGCACGCTTCCAAGGAGGATGAGGAGAGGATTCAGTTGGCCCTGGATAGTGAGGAAGCTATTCCTGGGAATGGTGACTGGGCTGTAAAGCTAGGAATCAATCTCTTTTATAGTGCAAATCTTAGCCGTTCTCCTCTTTATAGTAAGCAGATGCCTTACAATTCTGTTATATACTATGCATTTGGTTGTAGCTCTCCAGCAAGCTCACCTGTAGAACCAAAGGTCTACCAAAGACGAGTCAACCGGCAGAAAAAGGTTGTTGCTGGGAAATGGTGCGGTAAAGTTTGGATGTCCAATCAAGTACATCCCCTTCTAGCAAAAAGAGATTCTGAAGATGTTGAGGATGACAAACTCTTACTTGGGTGGATATTACCTGATGAGAAAATTGAGAGATCTGAAAGCACCCCCAAAAGCGAAACTATTGGCAGAAAATCAGGTAAGAAAAGGAAAATGACAGCAGAGAATGGGCGAATCAGGAAAGGAAGTTATTCTAAAAAAAATGTAGTTTCAAATAATCCAACTGCAGATAAACCCAACTCACAGGCAAGGAGGATTTTTAGAATTAAGAAAGCTAGGAATGTTGAGACAGACCATGCTGCTTTGAAAGGGAATTATTCTCCTCTATATCATCATGAAAAACCTATAAGTAAGCAATCAAATTGCACTGAAAGTGATGCGGCTTCTGATGAGTCTCTTGATGATGATGATCACATGCGGCATAGGAGAAATGTTAATATCGAAGATGCTAAATTTCTTGACAATGAGGTACTTTCAAATGATACAGTGGACTGTGATTCTGATTGGCAGCAAAGGGAAGAACCTAGCAGCAAGCAAGTTGAAGATACAGAGAAAGATGCAATTTCAGAGGATTCTTTAGATGTTGATTCTCTTCAGCTACAAAGGAAGCCTGCCAAAGGAAAGCATCCAAAATGCATTAGTGAAGAGGATATAATTTCTGATGACCAAATTGAGAGTCGGTCTCAAAAACGGCAGAGGAGAATTCCTAAAAGCAGGCAAGGAACTCGAAAAGATATAATATCCGTTGACCAACTAGAGCTGAAAATGCAGAAGCAGCAACGGAGGAATCCCAAAAGCAGGCAAGCCAAATTCCTCAATGAAGAGGATATTGCATCTGATGACCAACTGGAGGGCCTTTATCATAGATATCAAAGAAGAAATCCTAAAGGTAGGCAGGCCAAATGTGTAACAGGTGAAGATGAAATGTCTGATGACCAATTGGAGGATCATCGTCAGAAGCAGCTAACAAGTTTCTCTAGGAAAAGGCAAAACAAAGGCATCGAAAGAGAAATTAAAAATGTAATGTCTGATGACCAATTGGAGGATAATTTTCTCAAGCAACATAGAAAACTTCCAAAGGGCAGGCAAAACAAAAACACTGATAACGAAGTTGCAGATGACTCAGCTGAGAATAATTCCCACCTGCTGCTTCATAGAACTCATAAAAGGAAGCAAGCTAAATGCATGGACGAAGATGAAATGAATTCAGAAGATGAAATGGAAGATGATCAGCAGCTGAGGAGAACTCTTCGAAGCAAACAATCTAAACCAAAGACACTTCAACAGATGAAACAAGCTAATTCCCTCCAAGTGAAAAACCGGGCATCTCGGTCATTAAAACAGGGGTCTCGAATGCTTGTGAAATCAAAGGTTCCTCAGCAAACAAAGTCTGCTCATTTGCGGAATAAGCAATCTAATAACTCCAGGGAGTTTAGTTTACATATGGAAGATGAGGAAGAAGGTGGACCTAGCACACGCCTTAGGAAGAGAGCCACAAAAGCTCAGGAATCTGAAGGAAAATTGAAAAACAAGCAAACAAAACGGAAGGTGAAGAACACTACAGCTGCAAAGGTTTCAGTTGGGCATACCAAAATGAAGGATGGGGAAGCAGAATATCAGTGTGATATTGATGGTTGCACTATGAGTTTTGGATCAAAACAGGAGCTGCTGCATCATAAGAAAAATATATGCCCTGTAAAAGGGTGTGGGAAAAAGTTTTTCTCACACAAGTATCTGGTGCAGCACCGTCGGGTTCATGAAGATGATCGCCCCTTGAAGTGTCCTTGGAAGGGATGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACCGAGCACATTCGAGTCCACACTGGTGCACGGCCATATGTATGTGCTGAGCCAAATTGTGGACAAACATTCAGATTTGTATCTGATTTCAGTCGTCATAAACGAAAGACAGGTCATTCAGCAAAGAAGAGTCGTCAATAG 4956 0.4358 EKAMAFVLEEAQNKSTQVTCFYYLLYLILLTPAPAPSAASFLCPKFFYSLSHITHHFPSSGNRGRGTKEGGRQNLINTLRSHRKSIMGLGSEGNGDVLPWLKSLPVAPEYRPSAAEFQDPIGYIFKIEKEASKYGICKIIPPFPPSSKKTAIANLNRSLADVGSTFTTRQQQIGFCPRRPRPVQRPAKSFEKTYLKRHAKKGSGSGSGLGPLETETLFWKATLDKPFSVEYANDMPGSAFSPKCRHTGDPSSLADTPWNMRAVSRANGSLLQFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHSGFSHGFNCGEAANIATPEWLRVAKDAAIRRASLNYPPMVSHFQLLYDLALALCSRIPVSISAEPRSSRLKDKKKGEGETVIKELFVQDVLQNNDLLHILGKGSAVVLLPRSSVDISVCSKLRVGSQQSVNVRNSEGLHSSKGFVSDDLVFNRSQGIRHENRFYSVKDKFTTLCERNKISSFDVNGNISTSSSKPLQRDTERETSQGDGLSDQRLFSCVTCGILSFSCVAVVQPRETASRYLMSADCSFFNDWVVGSGVSSNKLTIAHEDARWKKKNVQDDIHDVPVQSSWEALNTESEKGNTALALLASAYGNSSDSEEDPIADERRESNLINSASESLLSHAQDSHASPMTALDRGDDMPSKSTSCEDFMHHRFEYNLSHQSLDHSLEKEDYNIKSGVTFENMRMVPNSISNCSQDTHDADRSLSNRSMIPFDSKNTSLVLQSDEDSSRMHIFCLEHAAAAEQQLRPIGGAHILLLCHPDYPKIEAEAKMVAEDLGIDYMWKNIAYRHASKEDEERIQLALDSEEAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYYAFGCSSPASSPVEPKVYQRRVNRQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDVEDDKLLLGWILPDEKIERSESTPKSETIGRKSGKKRKMTAENGRIRKGSYSKKNVVSNNPTADKPNSQARRIFRIKKARNVETDHAALKGNYSPLYHHEKPISKQSNCTESDAASDESLDDDDHMRHRRNVNIEDAKFLDNEVLSNDTVDCDSDWQQREEPSSKQVEDTEKDAISEDSLDVDSLQLQRKPAKGKHPKCISEEDIISDDQIESRSQKRQRRIPKSRQGTRKDIISVDQLELKMQKQQRRNPKSRQAKFLNEEDIASDDQLEGLYHRYQRRNPKGRQAKCVTGEDEMSDDQLEDHRQKQLTSFSRKRQNKGIEREIKNVMSDDQLEDNFLKQHRKLPKGRQNKNTDNEVADDSAENNSHLLLHRTHKRKQAKCMDEDEMNSEDEMEDDQQLRRTLRSKQSKPKTLQQMKQANSLQVKNRASRSLKQGSRMLVKSKVPQQTKSAHLRNKQSNNSREFSLHMEDEEEGGPSTRLRKRATKAQESEGKLKNKQTKRKVKNTTAAKVSVGHTKMKDGEAEYQCDIDGCTMSFGSKQELLHHKKNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPNCGQTFRFVSDFSRHKRKTGHSAKKSRQ 1651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00478 1651 ProSiteProfiles Zinc finger C2H2 type domain profile. 1588 1617 IPR013087 -
Pste2g00478 1651 ProSiteProfiles JmjN domain profile. 107 148 IPR003349 -
Pste2g00478 1651 ProSiteProfiles Zinc finger C2H2 type domain profile. 1558 1587 IPR013087 -
Pste2g00478 1651 MobiDBLite consensus disorder prediction 1028 1058 - -
Pste2g00478 1651 MobiDBLite consensus disorder prediction 729 755 - -
Pste2g00478 1651 Pfam jmjN domain 108 141 IPR003349 -
Pste2g00478 1651 MobiDBLite consensus disorder prediction 1473 1506 - -
Pste2g00478 1651 ProSitePatterns Zinc finger C2H2 type domain signature. 1620 1644 IPR013087 -
Pste2g00478 1651 SUPERFAMILY beta-beta-alpha zinc fingers 1598 1642 IPR036236 -
Pste2g00478 1651 MobiDBLite consensus disorder prediction 579 598 - -
Pste2g00478 1651 MobiDBLite consensus disorder prediction 1235 1256 - -
Pste2g00478 1651 Gene3D Classic Zinc Finger 1554 1642 - -
Pste2g00478 1651 ProSitePatterns Zinc finger C2H2 type domain signature. 1560 1582 IPR013087 -
Pste2g00478 1651 MobiDBLite consensus disorder prediction 1350 1519 - -
Pste2g00478 1651 FunFam Probable lysine-specific demethylase ELF6 1615 1644 - -
Pste2g00478 1651 ProSiteProfiles Zinc finger C2H2 type domain profile. 1618 1649 IPR013087 -
Pste2g00478 1651 FunFam Probable lysine-specific demethylase ELF6 1585 1614 - -
Pste2g00478 1651 MobiDBLite consensus disorder prediction 1292 1337 - -
Pste2g00478 1651 ProSiteProfiles JmjC domain profile. 252 421 IPR003347 -
Pste2g00478 1651 SUPERFAMILY beta-beta-alpha zinc fingers 1559 1591 IPR036236 -
Pste2g00478 1651 MobiDBLite consensus disorder prediction 1159 1272 - -
Pste2g00478 1651 SUPERFAMILY Clavaminate synthase-like 250 439 - -
Pste2g00478 1651 SMART cupin_9 252 421 IPR003347 -
Pste2g00478 1651 MobiDBLite consensus disorder prediction 1418 1472 - -
Pste2g00478 1651 MobiDBLite consensus disorder prediction 1028 1080 - -
Pste2g00478 1651 MobiDBLite consensus disorder prediction 1061 1076 - -
Pste2g00478 1651 ProSitePatterns Zinc finger C2H2 type domain signature. 1590 1612 IPR013087 -
Pste2g00478 1651 SMART JmjN_1 106 147 IPR003349 -
Pste2g00478 1651 MobiDBLite consensus disorder prediction 1102 1134 - -
Pste2g00478 1651 PANTHER LYSINE-SPECIFIC DEMETHYLASE 99 1252 - -
Pste2g00478 1651 Gene3D Cupin 100 425 - -
Pste2g00478 1651 Coils Coil 1245 1265 - -
Pste2g00478 1651 MobiDBLite consensus disorder prediction 1204 1227 - -
Pste2g00478 1651 SMART c2h2final6 1535 1557 IPR013087 -
Pste2g00478 1651 SMART c2h2final6 1588 1612 IPR013087 -
Pste2g00478 1651 SMART c2h2final6 1558 1582 IPR013087 -
Pste2g00478 1651 SMART c2h2final6 1618 1644 IPR013087 -
Pste2g00478 1651 MobiDBLite consensus disorder prediction 1162 1188 - -
Pste2g00478 1651 MobiDBLite consensus disorder prediction 1350 1379 - -
Pste2g00478 1651 Pfam JmjC domain, hydroxylase 285 403 IPR003347 -
Pste2g00478 1651 MobiDBLite consensus disorder prediction 1295 1337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00478 Pste-Chr2 4384667 4394264 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00478 840 941 C2H2 Transcription Factor Family AT5G04240 35.294 1.03e-14 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste2g00478 JmjC 6.4e-36 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g00478 2 4384667 4394264 Pste2g00478 2 4384667 4394264 ECH