Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00476 AAAATAAATAATGGGACTAGGTTCTGAAGGAAACGGTGACGTTTTACCATGGCTGAAATCGCTACCCGTGGCCCCGGAGTACCGGCCAAGCGCGGCGGAGTTCCAAGATCCTATTGGCTACATATTCAAGATCGAGAAGGAAGCTTCCAAGTACGGTATCTGCAAAATCATCCCTCCATTCCCACCTTCTTCGAAGAAAACCGCCATCGCCAACCTCAACCGATCACTCGCCGATGTAGGTTCTACATTCACCACGCGCCAGCAGCAGATCGGGTTCTGCCCCCGCAGGCCCAGGCCCGTCCAGCGGCCCGTTTGGCAGAGCGGCGACCGCTACACCTTCAGCGAGTTTGAGTCCAAGGCCAAGTCCTTCGAGAAGACATACCTAAAACGGCATGCTAAGAAGGGCTCGGGCTCGGGCTCGGGCTTGGGCCCGCTGGAGACAGAAACGCTTTTCTGGAAGGCCACGCTGGACAAACCCTTCTCCGTGGAATACGCGAACGACATGCCGGGTTCCGCGTTTTCCCCGAAATGCCGGCACACAGGGGATCCCAGCTCTCTGGCGGACACTCCGTGGAACATGAGAGCTGTTTCTCGGGCCAACGGCTCTCTCTTGCAGTTCATGAAAGAGGAAATTCCTGGCGTTACTTCTCCTATGGTTTACGTGGCCATGCTCTTCAGCTGGTTCGCTTGGCACGTCGAGGACCACGACTTGCACAGCTTGAACTACCTCCACATGGGCGCCGGCAAAACCTGGTACGGCGTTCCTCGCGACGCCGCCGTCGCATTTGAGGAAGTCGTTAGGGTTCACGGCTACGGCGGCGAGATTAACCCCCTCGTAACTTTTGCTATTCTTGGTGAGAAAACCACAGTGATGTCGCCTGAAGTATTTATTGGTGCAGGTGTTCCATGCTGCAGGTTAGTACAAAATGCTGGGGAATTTGTTGTGACGTTTCCAAGAGCCTATCACACAGGGTTTAGTCATGGTTTTAATTGTGGAGAGGCAGCGAATATTGCTACACCTGAGTGGTTGAGATTTGCTAAAGATGCTGCTATTCGTAGGGCTTCACTAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTGTGTTCTAGAATTCCTGCTGGCGTCAGTGCTGAACCTCGTAGTTCTCGTCTTAAAGATAAGAAGAAGGGTGAAGGAGAAACTGTAATTAAAGAACTATTTGTCCAGGATGTGTTGCAGAACAATGATCTGCTTCATATACTTGGGAGAGGATCTGCTGCAGTACTTCTTCCTCGTAGTTCAGTTGATATTTCTGTCTGCTCAAAATTACGTGTTGGATCTCAGCAATCCATCAATGTAAGCAATTCTGAGGGAATGCATTGCTCAAAAGGTTTTGTGTCTGATGATCTGGTATTCAACAGGAGTCATGGAATCAAGCAAGAAAAAAGTTTCTATTCTGTGAAAGACAAGTTTACTACGTTGTGTGAAAGGAACAGGATTTCCTCTTTTGATGTAAATGGCAACATAACCATTTCAAGTTCTAAGCCACTTCAAAGAGATATCGAAAGAGAAAATTGTCAAGGAGATGGGTTGTCAGATCAGAGACTGTTTTCATGTGTCACATGTGGAATATTAAGCTTTTCTTGTGTTGCTATTGTACAACCTAGAGAACCTGCAGCTAGATATCTTATGTCAGCTGATTGCAGCTTCTTTAATGATTGGGTTGTTGGGTGGATTAAAAAGAATGTCCAAGATGTTATACATGATGTTCCTGTTCAATCTTCTCAGGATGCTTTAAATACTGAAAGTGCATATGGCAATACGGCTCTTGCATTATTGGCTTCAGCATATGGAAATTCTTCTGACTCTGAAGAAGATATGATTACGGTTGACCGTCATGAATCAAATGAGATAAACTCTGCTTCAGAAAGTTTACTTTCTAATACTCAAGATTCCCATGCCAGTCCCATGACTGCACTTGACAGGGTAGATATTCCTTCAAAGGGTGCCAGTGGTGAGGATTTTATACATAGTAGATTTGACTGTAGTTTGAGTCATCACTCTATAGACCACTCTTTTAAGAAACAGGATTTTAATATGGTTACATTTGAAAGTTCGAGGATGGTGCCTAATTCCACCTCTAATTATTCCCAAGATGCTCATGATGCTGAAAGGTCATTGTCTAACAAGTGTATGGTTCCCTTTGATAATAAAAATGATTCGATGATGCTACAATCTGATGAAGACTCGTCCAGAATGCATGTTTTTTGTCTAGAGCATGCTGCAGAAGCAGAGCAGCAACTTCGCCCAATAGGTGGAGCCCACATATTTCTCCTATGTCATCCAGATTATCCTAAGATAGAGGCTGAAGCAAAAATGGTGGCAGAAGATTTGGGGATTGATTACATGTGGAAAAATATTGAATACAGGCATGCTTCCAAGGAGGACGAGGAGAGGATCCAGTCAGCCCTGGATAATGAGGAAGCTATTCCTGGGAATGGTGACTGGGCTGTAAAGCTAGGAATCAATCTCTTTTATAGTGCAAATCTCAGCCGCTCTCCTCTTTATACTAAGCAGTTGCCTTACAATTCTGTTATATACTCTGCATTTGGTTGTCGCTCTCCAGCAAGCTCACCCATTGAGCCAAAGGTCTACCAAAGACAAGTTAGCAGACAGAAAAAGGTTGTTGCTGGGAAATGGTGTGGTAAAGTTTGGATGTCCAGTCAGGTCCATCCCCTTTTAGCAAAAAGAGATTCTGAAGATGTTGAGGATGAGAAACTCTTTCTTGGGTTGATACTTACTGATGAGAAAATTGAGAGACCTGAAAGTGCTATCAAAAGTGAAATTACTTGCAGAAAATCAGGTAAGAAAAGGAAACAGATAGCGGGGAATGGACGAACTAAGAAAGGAAGTTATGGTAAGAAAATTCTAATTTCCAATAATTCCACTGAAGATAAACACAACTCACAGCCAAGGACTCTTAGAAGTAAGAAAGCCAGGCTTGTTGAGAGAGGCCATGCTGCTTTTGAAGGGGATTATTCTCCTCCATATCATCATAAAAAACCTGTAAGATACCAAACAAACTACACAGAAAGTGATGCAGTTTCTGATGATTCACTTGATGATGACGATGATAACACTCAGCATAGGAGGAATGTTAATGTTGAAAAAGCTAAATTTATTGATAATGATGTGGTTTCAAATGATACAGTGGACTATGATTCTGATTGGGAGCAGAGGGAAGAACTTGGAGGCAAGCAAGTGGAAGATACAGGGAAAAATTCATTTTCAGAGGATTCTTTGGATGTTGGTTCTCTTCAGCTGCAAAGGAAGACTCCCAAAGGCAAGAATGCAAAATACGTTTGTGAAGAAGATAGAGTTTCTGATGACGAAATGGAGAGTTGTTTTCAAAAGCGGAAAGGGAGAATACCTAAAAGCATGCAAGGCAAATACCTTAATGGAAAAGATACAATAGCTGATGACCAACTAGAGATCAAAATGCAGAAGCCGCAATGGAGAAATTTTAAAAGCAGGCAAGTCAAATACCTCAATGAAGAGGCATCAGATGACCAATTAGAGGGCCATTATCGAAGGTATCAAAGAAGGAATTCTAAAGGCAGGCAGGTCAAATGTGTAGCAGGGGAAGATGAAATGTCTGATGAACAATTGGAGGATCATTGTCAGAAGCAGGAAACAAGTTTCTCTAGGAAAAGACAAACCAAAGGCATTGGTAGAGAAGTTAAAAATGAAATGTCTGATGACCAATTGGAGAATCATTTTCTGAAGCAGCAGAGAAGGTTTCCTAAGAGCAAGCAAAACAAACACAGTAATAAACAAGTTATGGATGACTTGGCTGAAAATAATTCTCATCTGCATAGAACTCCTAAAAGGAAGCAAGCTAAATGCGAGGATGAAGATGATATTAATTTAGATGATGAAATGGAGGATGATCAGCTGCTGAGGAGAAATTCAGATGATGAAATGGATGATCAGCAGCTGAGGAGAACTCTTCGAAGTAAACAGTCTAAACCAAAGACACTTCAACAGCTGAAACAAGCTAATTCCCTTCAAGTGAAAAACCAGGCATCTCGACCCATAAAACAGGGGTCTCGGATGCTGGTGAAATCAAAGGCTCCTCAGCAAATAAAACAGCCTGCTCATTTGCGGAATAAGCAATCTGATAACTCCCGCCAGTTTAGTTTACATATGGAAGACGAGGAAGAAGGTGGACCCAGCACTCGCCTTAGGAAGAGAGCCACAAAGAATCAGGAATCTGAAGGAACATTGAAAGAAAAGCAAACAAAAAGGAAGGTGAAGAATTCTACAGCTGCAAAGGTTTCAGTTAGCTTTACCAAAGTGAAGGATGGGGAAGCAGAGTATCAGTGTGATATAGATGGGTGCTCTATGAGTTTTGCATCAAAACAGGAGCTGCTGCATCATAAGAAAAATATCTGCCCTGTAAAAGGGTGTGGAAAGAAGTTTTTCTCACACAAGTATCTGGTGCAGCACCGTCGCGTTCATGAAGATGAACGCCCCTTGAAGTGTCCTTGGAAGGGATGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACTGAGCACATTCGCGTTCACACTGGTGCACGACCTTATGTATGTGCTGAGCCAAATTGTGGACAAACATTTAGATTTGTGTCTGATTTCAGTCGTCATAAACGAAAGACTGGTCATTCAGCAAAGAAGAGTCGTCAATAGCCAAGTGAAATAGATGTTTAATTGTTGTTTAACATGATATTTTATGAATTTGTGAATCATTGCCCAATTAACCGGCTAGGACTAGGGTTTAGCAACAGTTTAGGATATTCCTGCAATTGCCATTTGTAGTAACTGTTAATTACGTTTTCCCTTTGGGTTGTCAACCCAATTGTTTATTACAATTAAAGTAATTGCTTGGATCTTGAAACATGATTCACATCCAGTTCATATTACATGCAAATGTTGTT 4983 0.4283 MGLGSEGNGDVLPWLKSLPVAPEYRPSAAEFQDPIGYIFKIEKEASKYGICKIIPPFPPSSKKTAIANLNRSLADVGSTFTTRQQQIGFCPRRPRPVQRPVWQSGDRYTFSEFESKAKSFEKTYLKRHAKKGSGSGSGLGPLETETLFWKATLDKPFSVEYANDMPGSAFSPKCRHTGDPSSLADTPWNMRAVSRANGSLLQFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFIGAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRFAKDAAIRRASLNYPPMVSHFQLLYDLALALCSRIPAGVSAEPRSSRLKDKKKGEGETVIKELFVQDVLQNNDLLHILGRGSAAVLLPRSSVDISVCSKLRVGSQQSINVSNSEGMHCSKGFVSDDLVFNRSHGIKQEKSFYSVKDKFTTLCERNRISSFDVNGNITISSSKPLQRDIERENCQGDGLSDQRLFSCVTCGILSFSCVAIVQPREPAARYLMSADCSFFNDWVVGWIKKNVQDVIHDVPVQSSQDALNTESAYGNTALALLASAYGNSSDSEEDMITVDRHESNEINSASESLLSNTQDSHASPMTALDRVDIPSKGASGEDFIHSRFDCSLSHHSIDHSFKKQDFNMVTFESSRMVPNSTSNYSQDAHDAERSLSNKCMVPFDNKNDSMMLQSDEDSSRMHVFCLEHAAEAEQQLRPIGGAHIFLLCHPDYPKIEAEAKMVAEDLGIDYMWKNIEYRHASKEDEERIQSALDNEEAIPGNGDWAVKLGINLFYSANLSRSPLYTKQLPYNSVIYSAFGCRSPASSPIEPKVYQRQVSRQKKVVAGKWCGKVWMSSQVHPLLAKRDSEDVEDEKLFLGLILTDEKIERPESAIKSEITCRKSGKKRKQIAGNGRTKKGSYGKKILISNNSTEDKHNSQPRTLRSKKARLVERGHAAFEGDYSPPYHHKKPVRYQTNYTESDAVSDDSLDDDDDNTQHRRNVNVEKAKFIDNDVVSNDTVDYDSDWEQREELGGKQVEDTGKNSFSEDSLDVGSLQLQRKTPKGKNAKYVCEEDRVSDDEMESCFQKRKGRIPKSMQGKYLNGKDTIADDQLEIKMQKPQWRNFKSRQVKYLNEEASDDQLEGHYRRYQRRNSKGRQVKCVAGEDEMSDEQLEDHCQKQETSFSRKRQTKGIGREVKNEMSDDQLENHFLKQQRRFPKSKQNKHSNKQVMDDLAENNSHLHRTPKRKQAKCEDEDDINLDDEMEDDQLLRRNSDDEMDDQQLRRTLRSKQSKPKTLQQLKQANSLQVKNQASRPIKQGSRMLVKSKAPQQIKQPAHLRNKQSDNSRQFSLHMEDEEEGGPSTRLRKRATKNQESEGTLKEKQTKRKVKNSTAAKVSVSFTKVKDGEAEYQCDIDGCSMSFASKQELLHHKKNICPVKGCGKKFFSHKYLVQHRRVHEDERPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPNCGQTFRFVSDFSRHKRKTGHSAKKSRQ 1574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00476 1574 ProSiteProfiles Zinc finger C2H2 type domain profile. 1541 1572 IPR013087 -
Pste2g00476 1574 SUPERFAMILY Clavaminate synthase-like 107 369 - -
Pste2g00476 1574 ProSitePatterns Zinc finger C2H2 type domain signature. 1513 1535 IPR013087 -
Pste2g00476 1574 SMART JmjN_1 20 61 IPR003349 -
Pste2g00476 1574 SMART cupin_9 182 351 IPR003347 -
Pste2g00476 1574 Gene3D Classic Zinc Finger 1538 1567 - -
Pste2g00476 1574 MobiDBLite consensus disorder prediction 1273 1303 - -
Pste2g00476 1574 Gene3D Classic Zinc Finger 1428 1480 - -
Pste2g00476 1574 SMART c2h2final6 1511 1535 IPR013087 -
Pste2g00476 1574 SMART c2h2final6 1541 1567 IPR013087 -
Pste2g00476 1574 SMART c2h2final6 1481 1505 IPR013087 -
Pste2g00476 1574 SMART c2h2final6 1458 1480 IPR013087 -
Pste2g00476 1574 MobiDBLite consensus disorder prediction 1206 1262 - -
Pste2g00476 1574 ProSiteProfiles Zinc finger C2H2 type domain profile. 1481 1510 IPR013087 -
Pste2g00476 1574 MobiDBLite consensus disorder prediction 1340 1365 - -
Pste2g00476 1574 ProSiteProfiles JmjC domain profile. 182 351 IPR003347 -
Pste2g00476 1574 MobiDBLite consensus disorder prediction 1396 1436 - -
Pste2g00476 1574 FunFam Probable lysine-specific demethylase ELF6 1538 1567 - -
Pste2g00476 1574 ProSitePatterns Zinc finger C2H2 type domain signature. 1483 1505 IPR013087 -
Pste2g00476 1574 Pfam JmjC domain, hydroxylase 215 333 IPR003347 -
Pste2g00476 1574 SUPERFAMILY beta-beta-alpha zinc fingers 1497 1539 IPR036236 -
Pste2g00476 1574 MobiDBLite consensus disorder prediction 1381 1395 - -
Pste2g00476 1574 MobiDBLite consensus disorder prediction 1184 1438 - -
Pste2g00476 1574 Gene3D Classic Zinc Finger 1481 1508 - -
Pste2g00476 1574 Gene3D Classic Zinc Finger 1509 1537 - -
Pste2g00476 1574 MobiDBLite consensus disorder prediction 1313 1335 - -
Pste2g00476 1574 ProSitePatterns Zinc finger C2H2 type domain signature. 1543 1567 IPR013087 -
Pste2g00476 1574 ProSiteProfiles JmjN domain profile. 21 62 IPR003349 -
Pste2g00476 1574 MobiDBLite consensus disorder prediction 1030 1049 - -
Pste2g00476 1574 MobiDBLite consensus disorder prediction 951 998 - -
Pste2g00476 1574 Pfam jmjN domain 22 55 IPR003349 -
Pste2g00476 1574 MobiDBLite consensus disorder prediction 1080 1099 - -
Pste2g00476 1574 MobiDBLite consensus disorder prediction 1080 1094 - -
Pste2g00476 1574 FunFam Probable lysine-specific demethylase ELF6 14 355 - -
Pste2g00476 1574 SUPERFAMILY beta-beta-alpha zinc fingers 1529 1563 IPR036236 -
Pste2g00476 1574 FunFam Probable lysine-specific demethylase ELF6 1508 1537 - -
Pste2g00476 1574 SUPERFAMILY beta-beta-alpha zinc fingers 1454 1510 IPR036236 -
Pste2g00476 1574 PANTHER LYSINE-SPECIFIC DEMETHYLASE 13 1069 - -
Pste2g00476 1574 ProSiteProfiles Zinc finger C2H2 type domain profile. 1511 1540 IPR013087 -
Pste2g00476 1574 Gene3D Cupin 14 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00476 Pste-Chr2 4368409 4378582 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00476 1408 1572 C2H2 Transcription Factor Family AT3G48430 63.043 1.25e-66 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste2g00476 JmjC 2e-35 CL0029