Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00475 AAAGTAACCCCCTTTTCTTTCACACTTTCTTCATTCTCATTTTCTGACGTACCCATAAATAAATCCCCTTCCTTACACTCTTTTTTTGTTTCCCCTATCATTCAATTTCCCATTATTAGGGTTTTTCATTTGAAATGTGTAGGGACAACAATGGAGCCTTTTGAATCCGAATCACTCAGTTCCTCCCTCAAGGACCCGCAATTGGGTAAACCTTCTTCTTCTTCCCTCGATCACGATCCTCCTCCCTCAGATCTCAATCACGTTACCCTCCTTGATGATGCACTTGGTGAGGAGCTTCAGGACAAGTTGGATTTGAAGGATGAGGGTGAGGCTGAGAATAAAGCTTCCAACTTGGAAGATGGGGGGGAAAAATTGAGTGACCAAGATGCTGCCCCCGAAGGTGGTAAGAGAGAAGGGTGTGTTGATGTTGTCGGTGATGATGATGATGGTTGGAATGGTGGGGATGAGGGGTGTGACTGGATTGAGAATGTGAACGAGAGTGAGAGTGATACGGTGGGTGGAGAGGTTGAGGGAGTGGAGAACAGGGATGAGAGGAGCAGTGGTAGAGCTCAACAGTATCCGTTGAGGCCAGATGCTGAAGACTGTGCATTTTATATCAAAACCGGAACTTGCAAATTTGGATTCAATTGCAAGTTCAATCATCCCATTAGGAGGAAAAATCAGGTTAAAAAAGAGAATGCGGGAGAAAGGGATGAGCAGGCAGAAAGATCAGGCCTGACGGAATGCAAGTATTATTTAAGGTCTGGGGGCTGTAAGTTCGGAAAGGCTTGTAAGTTTAATCACACAAGAGGAAAGTGTTCATCACCTTCTCCAATTGTAGAGCTTAACTTCCTTGGCCTGCCTATTCGTGTGGGAGAGAAAGAGTGCCACTATTACATGCGCACAGGCTCTTGTAAGTTTGGATCAAACTGCAAGTTTAATCATCCCGATCCTACAACTGTTGGAGGAAGTGATTCTCCTTCTCGTTATGGTAATGGAAGTTCTATTTCATTACAAGGTGTATCACAATCATCTGTATCCTCGTGGGCTTCTACTAGACCATTAAATGAATCTGCTCCTTTTGTGCCGGTGATACTTTCAACTAATCCAGGGGTTTCTCCCCAAAGTTCTGAGTGGAATGGATATCAGGCACCTGTCTATCTATCTGAGAGGAGTCTTCATCCACCTTCTACATATGTCATGAACAACCCTGCTATGGAAACAAATGTTTATATGCCCCATCAAAAACAAATGCAGGTTGAAGATTTTCCTGAAAGGCCTGGTGAACCTGAATGCACCTATTTCTTAAAAACTGGGGATTGCAAGTTTAAATCTAATTGTAAATTTCACCATCCAAAGAATCGGATTGCAAGATTACCTCCATGCAACCTCAGTGACAAGGGTCTACCTTTGAGACCGGACCAGAATGTTTGCACGTATTACAGTCGTTATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTCGATCACCCACCACCCTCAGCTATGGCTGGACTTGATCAACCTTCCTCGTACACAAACTCAGCTAGTGTTGATGCAGCTGAAAATGGAGATGCCAACGATGAAAACTAGCAGTCTATGTAAAACATTTTCTGGCTTTGAGTAATGCATATCACCCATAAGTTGTAATTTTCTTCTAAAAAACATGATAAATTTATTTAATTTCATTAGGTATGCCTAATGTGGCACAAGCTTTGCAGAATAGCAATATATTAATATATATCCTAAATAGAAGTTTTATTACAGTAAGATGCAGATTGGCTTTGCTTCTGGTTTTTTTCTTTCACATGGATCATTATTAGATTTTGGTTGTTTTGGTGAAAAATAGGTGTGAATGTGCATTTTCTGGTTTTC 1875 0.4165 MEPFESESLSSSLKDPQLGKPSSSSLDHDPPPSDLNHVTLLDDALGEELQDKLDLKDEGEAENKASNLEDGGEKLSDQDAAPEGGKREGCVDVVGDDDDGWNGGDEGCDWIENVNESESDTVGGEVEGVENRDERSSGRAQQYPLRPDAEDCAFYIKTGTCKFGFNCKFNHPIRRKNQVKKENAGERDEQAERSGLTECKYYLRSGGCKFGKACKFNHTRGKCSSPSPIVELNFLGLPIRVGEKECHYYMRTGSCKFGSNCKFNHPDPTTVGGSDSPSRYGNGSSISLQGVSQSSVSSWASTRPLNESAPFVPVILSTNPGVSPQSSEWNGYQAPVYLSERSLHPPSTYVMNNPAMETNVYMPHQKQMQVEDFPERPGEPECTYFLKTGDCKFKSNCKFHHPKNRIARLPPCNLSDKGLPLRPDQNVCTYYSRYGICKFGPACKFDHPPPSAMAGLDQPSSYTNSASVDAAENGDANDEN 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00475 480 MobiDBLite consensus disorder prediction 44 94 - -
Pste2g00475 480 SUPERFAMILY CCCH zinc finger 381 405 IPR036855 GO:0046872
Pste2g00475 480 PANTHER PROTEIN PHOSPHATASE RELATED 47 465 - -
Pste2g00475 480 MobiDBLite consensus disorder prediction 270 289 - -
Pste2g00475 480 ProSiteProfiles Zinc finger C3H1-type profile. 146 174 IPR000571 GO:0046872
Pste2g00475 480 MobiDBLite consensus disorder prediction 125 139 - -
Pste2g00475 480 ProSiteProfiles Zinc finger C3H1-type profile. 376 404 IPR000571 GO:0046872
Pste2g00475 480 SUPERFAMILY CCCH zinc finger 241 267 IPR036855 GO:0046872
Pste2g00475 480 Gene3D - 332 411 - -
Pste2g00475 480 Gene3D - 117 183 - -
Pste2g00475 480 ProSiteProfiles Zinc finger C3H1-type profile. 193 221 IPR000571 GO:0046872
Pste2g00475 480 ProSiteProfiles Zinc finger C3H1-type profile. 422 450 IPR000571 GO:0046872
Pste2g00475 480 MobiDBLite consensus disorder prediction 453 480 - -
Pste2g00475 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 243 266 IPR000571 GO:0046872
Pste2g00475 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 378 403 IPR000571 GO:0046872
Pste2g00475 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 425 449 IPR000571 GO:0046872
Pste2g00475 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 150 172 IPR000571 GO:0046872
Pste2g00475 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 197 218 IPR000571 GO:0046872
Pste2g00475 480 Gene3D - 188 275 - -
Pste2g00475 480 SUPERFAMILY CCCH zinc finger 197 222 IPR036855 GO:0046872
Pste2g00475 480 SUPERFAMILY CCCH zinc finger 420 447 IPR036855 GO:0046872
Pste2g00475 480 SMART c3hfinal6 422 449 IPR000571 GO:0046872
Pste2g00475 480 SMART c3hfinal6 146 173 IPR000571 GO:0046872
Pste2g00475 480 SMART c3hfinal6 242 267 IPR000571 GO:0046872
Pste2g00475 480 SMART c3hfinal6 193 220 IPR000571 GO:0046872
Pste2g00475 480 SMART c3hfinal6 376 403 IPR000571 GO:0046872
Pste2g00475 480 SUPERFAMILY CCCH zinc finger 147 174 IPR036855 GO:0046872
Pste2g00475 480 MobiDBLite consensus disorder prediction 1 141 - -
Pste2g00475 480 ProSiteProfiles Zinc finger C3H1-type profile. 240 268 IPR000571 GO:0046872
Pste2g00475 480 MobiDBLite consensus disorder prediction 456 471 - -
Pste2g00475 480 MobiDBLite consensus disorder prediction 1 30 - -
Pste2g00475 480 Gene3D - 420 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00475 Pste-Chr2 4349378 4354490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00475 372 450 C2H2 Transcription Factor Family AT3G02830 51.899 3.55e-21 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pste2g00475 zf-CCCH 6.8e-09 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01909 6 8825657 8829387 Pste2g00475 2 4349378 4354490 ECH
Pste2g00475 2 4349378 4354490 Pste2g00475 2 4349378 4354490 ECH
Pste6g01909 6 8825657 8829387 Pste2g00475 2 4349378 4354490 PCT