Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00462 TGCTCGTGAAGGACCGAAATTTGAAGATTGAGTTGAGGAGAGAGAAAAAATGGGCAAGGGACAACGACAACGAGTTCCTGCTTGTGCTGCTTGCACCCACAACTGCCTATTGTTTCACCCAACAAAACCAACCTCACCCACCTCTTTCTTCAAGATCATCACTAAACAACGTTATTTAACCTCTTTGAATATTCCTCCTGCTTTTAGCAGTACTGTGTCACACTTGCTTAATAAGAAAATCACTCTGAATGATTCAAGTGAGCATCAATGGAAGGTGAAAGTATCAGAGGTTAATGGTTCTTTTGTTTTCAAGGAAGGATGGAGGGATTTTTCGTTGGATCATGGGCTTGATATTGGATATCTTGTGTTATTCAATTACATTAAGGATTTACACTTTGATGTCAAGATCTATGGTCTATCTGCATGTGAAAAGCTTGATTTTCCTAGAAATAGAAATCAGAAGAAAAGAAGCAGGGGCAGAAGTGGCTCTCCTGTTAGAGATGGTAAATTAGTTCGACAAAGTCCCAATGCCTTAGTTGTCTCCAAGCATCATGTGCCAAAAATGAAAAGCCAGTGCCGCAAGGTTGCCTTAGTAGAATCACAGAATGCTAAAGAGAGTGGCCAACTTATGTGCATATCAGATCCATGTTTTTCAACAAGCCGAGAATTTGACAAGAGCCATGGTGTTGATGGGAACATGAAAATTGCGAATGGAGATTTAGAAGTTTTTAATGTTGATTATGGATCCCATATATTTGAAAATGATGCAATTGTATGTAGTAAATATACATCCGAAGAGGTATTCAGCATGGGAGCTGCCTTAGATATATATGAACTAGAAATGGCTGGAAGAAATACTTATCTAGGTGAGGCAGACAAAAGCTCATATGACAATACTGCTACTTTGAAAATTGAAGAAAACAAAGACAATAAAGCAATCATGTCCAATGAGGAAGATCAAGAGTGCCTATTTTCCAAGGGGTTAGAAAGTGATCAGGCTGCAATATCCAAAAAGGAATCTGTTTTGCATAATGGTGGTTTTTGCAATGCCAAACAGAAGTTGAATGGGTTCTCGAATCCCCTAGATGCTCAAATCCACAACGATGAAATGAAGGAAGTACCTGTAGACATGACTCCCAAATTGTGTGGTCCAATGGATAAATTGAAAGTAAAAGGGTTGCTGAAGGAGAATAAGAGAGAGTTGGATCACTATTCTGACACATTTATTCAAGATAATGAGAGCCATTTTAAAACAGGAGATCCTCTCATGTCCAACGGGGAAGCTCTAGAGTGTCAATTTTTCAAGGGCTTAGAAAGTGGTCAGGCTGCAATAAACAAAAAGGAATCTGCTACGCATATGGGTGTGTTTTGCAACACCAAACAGAATGGTGAAATAAAGAAATTGGCTGTGGACGTGACTCCCATATTGTACAGTTCTACGGATAAATTGAATCTAACAGGTGACGTGCCTAAAACGTTAAATGAAGAGCTTGTAACTTTTGATGAATGGGAAGCAACAGGGTTGCCAAAGGAGATTAAGGAAGAGTTAAGCTCTGACATATCTAATTTAGATAATGAGAGTCACTTTAAAACTGCACCCCCTCTCTCCTGTGAGGTGCCCGATGATAATGTTTACCTTAAATTGCCCAAAAGCCTGCCTTTGACTTGCAGGGAAAAGGTATTGCAGAAAAGGAAGAAGATAGTGTTACTTCAGGATCAACAGAGGAGATTGTGGCCAGTCTTTTACCATGAACAACCGCAGTTACAAATACTGGCACATGGATGGTTTGAGTTTAGCAGAGCTAATAACATTCAACCAGGAGATGAGTGTATTTTTGAGGCCCAGCCTGAGCCTGGGAACAAGCCTAAACATATTTTATCTGTACGTATAGTCCACAAGTGATATATGCAGTTTTTGGGTTTTCTTTTGGATCCTAAACTCTAC 1945 0.3954 MGKGQRQRVPACAACTHNCLLFHPTKPTSPTSFFKIITKQRYLTSLNIPPAFSSTVSHLLNKKITLNDSSEHQWKVKVSEVNGSFVFKEGWRDFSLDHGLDIGYLVLFNYIKDLHFDVKIYGLSACEKLDFPRNRNQKKRSRGRSGSPVRDGKLVRQSPNALVVSKHHVPKMKSQCRKVALVESQNAKESGQLMCISDPCFSTSREFDKSHGVDGNMKIANGDLEVFNVDYGSHIFENDAIVCSKYTSEEVFSMGAALDIYELEMAGRNTYLGEADKSSYDNTATLKIEENKDNKAIMSNEEDQECLFSKGLESDQAAISKKESVLHNGGFCNAKQKLNGFSNPLDAQIHNDEMKEVPVDMTPKLCGPMDKLKVKGLLKENKRELDHYSDTFIQDNESHFKTGDPLMSNGEALECQFFKGLESGQAAINKKESATHMGVFCNTKQNGEIKKLAVDVTPILYSSTDKLNLTGDVPKTLNEELVTFDEWEATGLPKEIKEELSSDISNLDNESHFKTAPPLSCEVPDDNVYLKLPKSLPLTCREKVLQKRKKIVLLQDQQRRLWPVFYHEQPQLQILAHGWFEFSRANNIQPGDECIFEAQPEPGNKPKHILSVRIVHK 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00462 617 MobiDBLite consensus disorder prediction 134 153 - -
Pste2g00462 617 PANTHER B3 DOMAIN-CONTAINING 29 598 - -
Pste2g00462 617 SUPERFAMILY DNA-binding pseudobarrel domain 29 126 IPR015300 -
Pste2g00462 617 CDD B3_DNA 32 121 IPR003340 GO:0003677
Pste2g00462 617 CDD B3_DNA 530 597 IPR003340 GO:0003677
Pste2g00462 617 Gene3D - 498 617 IPR015300 -
Pste2g00462 617 ProSiteProfiles B3 DNA-binding domain profile. 31 124 IPR003340 GO:0003677
Pste2g00462 617 SMART B3_2 529 614 IPR003340 GO:0003677
Pste2g00462 617 SMART B3_2 33 124 IPR003340 GO:0003677
Pste2g00462 617 Gene3D - 26 126 IPR015300 -
Pste2g00462 617 Pfam B3 DNA binding domain 33 117 IPR003340 GO:0003677
Pste2g00462 617 ProSiteProfiles B3 DNA-binding domain profile. 515 617 IPR003340 GO:0003677
Pste2g00462 617 SUPERFAMILY DNA-binding pseudobarrel domain 535 599 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00462 Pste-Chr2 4224919 4229838 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00462 27 127 B3 DNA Binding Superfamily AT4G01580 31.068 4.85e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pste2g00462 B3 9e-12 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g00462 2 4224919 4229838 Pste2g00462 2 4224919 4229838 ECH