Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00428 GTTGCATCACCCTCAGCCTCGTTACACTGCTCCACTACTTGTAAGTACAGTGTTAAAGTGACTCTCTCTTTCTCTCTCTCATGATTTAAGCAACTTTTATAGTTTTCCTTTTCCAAGTTACTGAATGGCTTTTCTCATTCATTATCTGGATTGTGTTTTTGCCTCCATTGAGTCCTCTGATTGAGCTGACACACTCTTTGCATTCAGCATATTAACCTGTTCCCACCGTGTTTCTGGATTCATATCACGTGGGGTTCTGACATTTTTGTAGTTTCTTTGCTGTCCGGGTACCTCACCTTCAAGTTCTTTTTAACTCCTTATCTTTTTTTTTTTTCTCTTTGGGGTTTGAGTTTTCTACCTGTTTGGTTTCTCATATCACTGAAGAAACTCACCTAAAAAATAAAGAAAGTAACAAAATTGTGTTGCTTTTCTGTCTTTTGTTTGCTGTGGCACTCGTGCACCTTGCTTGCACACTGCACACTGCTTTTGTGAAGGCTTTCAAACGGTTACTGGTTACTCTTTGTTGGCCTTCTTATCTGTTGAAGTTATCTATGCAAATTGGTATTCTGATGCTGTTGAGACACTGTTGAAGTGGGGTTGTTTGGTTTCTCTTGCACTTTGATCCTTGTTGTGTGTGCAAGTCATGGATTCTTGGAGCTATGTTGCTGAGGAAAAAGATTATGTCTCCAATGAGGCACTCTCATCTCACAACACACTTGGGAGGAGTAAAGGTTCCTTTTTGGGTTGGGAGCTGAAAACCCCATCTAGTTTTTCCAATGACATGTTGGCTTTGGGACAGCAAAATGTTGAGGATCAAGGTTTTGGGGAGTTGGGGTTTCCAGGAATGTTGGGGAAACAGTTGTGTGGTGATTCTGTTGGTGGTGTTCAGAGCAGAAAGGTGGATGAGGTTGTTGACTGCAGAATCACTAGTTCTAGTCCTGTTGTGGCTGCCCCAAATGCATTTTCTGCAAGGGAGGACTTCAATCCCAAGGTTTCAAGCTCTCTGGGGGACTCTAATGGTGGCAATTCACTCATTGATTTGAAGCTGGGTCGATTTGCTGACCATGGAGATGCCATGGTTCCAACATTTTCCAAGGGAGCCTCAATTTTGTCTTCTTCTGAGTCATCCACGCCACCAAAGAGGGTGAGAGCTTCAGGGATTCATTCTCAGACTGCTTACTGCCAAGTCTATGGCTGTAACAAGGATCTGAGTGGTTGCAAAGACTACCACAAGAGGCACAAAGTTTGTGAGGCTCACTCCAAGACTTCCAAAGTTATAGTCAATGGCATTGAACAAAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTACTGGCTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAACGCCTTGCAGGCCATAATGAGAGGCGAAGAAAGCCACAAGTGGGTATTAACTCTGGAAAAGCTGGGAGGTTGCTTCATCCATATGGTGATAGCAGATTCCAGGAGACCATGCTAACATCATCTTTTATCTGCCAAGAGATACTTCCCAGTGGGGTCATGTCTTCTTCTGAGAAATATGGAACAGGTAACTGGTGGAGACCTATCAAAGCTGAAGATAGCGCCGGTTTTACTTTTAGGCCTCTTTCTTCTATTCCAATTACCAATGGACATCCTGAGTCAAGATCTCTATTTCGTTCATATAGCGAGAAACAACTTCCATTTCTTCATGAAAATGGCAATACATCTGCCACAGGAAACATCTTCTCTGAAAACAATAACCAATATCACCAGCCTTCCCTTGGTGGCCAAAATTCCATGTCACAATCACTATTCCAAGACACCTCCTTAGGAAGTGAGGACTTCAATGTTTTCGATACAGAATCAGCTGTTCAAGGATTATCAGGAATTTCTGACTCCGGCTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAAGCCAATCGTCAGGAATTCCCATGGCTCGCCGAATGGTTATTCCAAGCAGCCATAGCCATTACAGCATGAGTCAAGTTTCTGAAAAATTGATGGGAATCAGTTCACAAGCTTCAAGTGGAGTGTCAGATAGGTTTCCATCTGAATTCAATCCTGCAGATGGAAGTCATCTTAGTCCCATATTGATATCAGATAATAATGAAATTGTCAATTTTGAAATGGCAGATGGGATATTCCGAGGGTCAGATTTTGTGAACGTGAGAGATCGTCTTTCCTGCCAAGGTGACCTCACCATTGACTTGCTTCAACTATCATCACAACTTCAGCGCGTCGAGCATCAGAGGCAGTCCTTGCAGGTGAAACAAGAAAATGATTCTTCCTGCTCTCTCCGAATTACTTGAGACGCAACAAAGAGGGCACAGTGGGGAGAAGCTTCAGATGATCATTAGTATCTGCTGCTAACTAGTTTAAGTGGTTTTTTTGGGATCAATTCGTTTAAGCTGAAGGATAACAAGGACACAATAGTTCCTCTCAATAAAAACAGCCTGAGATGTATCAAAGTGTGCTCTTCTGATTCATGCCATAAGAATACTTCATTTTCAACAATATAATTGTTAACTAGAAACTGAAGTCTATATCATGATGAATATTAATTCTGTACGAATCCATTATTACTCCATC 2609 0.4205 MDSWSYVAEEKDYVSNEALSSHNTLGRSKGSFLGWELKTPSSFSNDMLALGQQNVEDQGFGELGFPGMLGKQLCGDSVGGVQSRKVDEVVDCRITSSSPVVAAPNAFSAREDFNPKVSSSLGDSNGGNSLIDLKLGRFADHGDAMVPTFSKGASILSSSESSTPPKRVRASGIHSQTAYCQVYGCNKDLSGCKDYHKRHKVCEAHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVGINSGKAGRLLHPYGDSRFQETMLTSSFICQEILPSGVMSSSEKYGTGNWWRPIKAEDSAGFTFRPLSSIPITNGHPESRSLFRSYSEKQLPFLHENGNTSATGNIFSENNNQYHQPSLGGQNSMSQSLFQDTSLGSEDFNVFDTESAVQGLSGISDSGCALSLLSSQSQNSSSQSSGIPMARRMVIPSSHSHYSMSQVSEKLMGISSQASSGVSDRFPSEFNPADGSHLSPILISDNNEIVNFEMADGIFRGSDFVNVRDRLSCQGDLTIDLLQLSSQLQRVEHQRQSLQVKQENDSSCSLRIT 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00428 561 MobiDBLite consensus disorder prediction 244 263 - -
Pste2g00428 561 SUPERFAMILY SBT domain 178 257 IPR036893 GO:0003677|GO:0005634
Pste2g00428 561 Gene3D - 171 241 IPR036893 GO:0003677|GO:0005634
Pste2g00428 561 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 108 547 IPR044817 GO:0003677
Pste2g00428 561 ProSiteProfiles Zinc finger SBP-type profile. 177 254 IPR004333 GO:0003677
Pste2g00428 561 FunFam Squamosa promoter-binding-like protein 14 171 241 - -
Pste2g00428 561 Coils Coil 529 549 - -
Pste2g00428 561 Pfam SBP domain 180 253 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00428 Pste-Chr2 3778798 3783621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00428 131 295 SBP-box Gene Family AT1G69170 55.758 1.22e-52 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pste2g00428 SBP 5.6e-31 No_clan