Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00414 GTCATGTATCATGTTCGGCTCCCACACTTGCTCCCTCTCACGTACATAAATAAAGATAGAGATAGCATATGTTATATAAACCATAGAATTTCATTAACCATAGAAGAAAAAATTTCATAAAGCATAGTGAAATTGAAGGGTGCTACGTCCTTGTTTTTCATGATCTCTTATTAATGATTCCAATTCGTGTGGGAATTGGCTTCTGGGTGTGGTGGTAATCAATAAGAGAGGATCAAAATTGAAGTGTTAGAACTTAGAACTTAGAACTTAGTAGTAGTGTAATAGAAGAGAGTTGTTATGGGGAGAGGAAGGGTGCAGTTGAAGAGGATCGAGAACAAGATCAATAGGCAAGTCACGTTCTCAAAGAGAAGGTCTGGTTTGCTCAAGAAAGCTCATGAGATCTCAGTGCTTTGTGATGCTGAAGTGGCCCTCATAGTCTTCTCCACCAAAGGAAAACTCTTTGAGTATTCTAGTGATCCCTGTATGGAAAGAATTCTTGAACGGTATGAGAGGTATTCATATGCAGAGAGGCAGCTTGTTGCAAATGATCAACCACAGAGTGAAAATTGGACTCTAGAACATGCAAAGATCAAAGCAAGGTTGGAAGTACTACAGAAAAATCAAAGGAATTTTATGGGACAAGATTTGGATGGCCTTAGTATCAAAGAGCTTCAGAATTTGGAGCATCAACTTGATAGTGCTCTCAAACACATTAGATCACGGAAGAACCAACTCATGTATGAATCTATTTCAGAGCTTCATAAAAAGGATAAGGCCTTACAGGAACAAAACAACACTCTTGCTAAGAAGAAGCTCCAATTTGCAGCTTCTGCATTATTTCTCTTCATATTTGAGATGATTTCTGCTATTAGGATAAAGGAGAAAGAGAAGGCACTAGCCCAACAGGCACAACTGGAGCAACATACTGATGAAATGGATCTAACTTCTTCTACCCTTGTTGTAACTCTTCCATTGGAGACCTCAAATCTTAGAGGGTCCTTACAAGCAAGAGGTGATGAAGGAGATAATGATGGCATCACAACTCCAACCCGAGCTAATGCCATTCTTCCACCTTGGATGCTTCGTCCTACAAATGAATAGAAAACTATATATTCATGACATAAATTTTAATTTAAATATGAATATGACCAATACAAAAAGCTTACCCTATAAAACGGTCAAGTGTGTTAGTTTAAAATATAACTTTTGGAACATCATCGATATGTAATATTTCTGTGACTACTACATTTCAAGGATGCTTAGTAAAATATATGGTATGGCCTGGCTAGACACACGCCTACAATACATATATAGTGTCGATTAATTATATATGTATGCTTCTTATCAAAACTTTTAAGTTGGTTCTTATCAAGATGAACATAGTG 1385 0.3711 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSSDPCMERILERYERYSYAERQLVANDQPQSENWTLEHAKIKARLEVLQKNQRNFMGQDLDGLSIKELQNLEHQLDSALKHIRSRKNQLMYESISELHKKDKALQEQNNTLAKKKLQFAASALFLFIFEMISAIRIKEKEKALAQQAQLEQHTDEMDLTSSTLVVTLPLETSNLRGSLQARGDEGDNDGITTPTRANAILPPWMLRPTNE 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00414 267 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pste2g00414 267 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pste2g00414 267 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pste2g00414 267 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pste2g00414 267 Coils Coil 125 145 - -
Pste2g00414 267 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Pste2g00414 267 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pste2g00414 267 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pste2g00414 267 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Pste2g00414 267 ProSiteProfiles K-box domain profile. 88 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste2g00414 267 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Pste2g00414 267 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pste2g00414 267 Pfam K-box region 83 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste2g00414 267 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Pste2g00414 267 FunFam MADS-box transcription factor MADS-MC 13 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00414 Pste-Chr2 3601000 3612580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00414 1 171 MADS-box Gene Family AT1G26310 67.630 1.54e-83 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pste2g00414 K-box 1.5e-28 No_clan