Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00403 TGAGCAAAACTCCATTTCCCGCTATGCTTGGAGGTGGTGGAGCTACTTCACACTTGTGAAGTAAGTAAACTCTTCATTCTTCAAACTGCAAACCCTTTTCGCTTTTCGCTTTTCCGATACGCCATGTCCGCTCTCACTTCACTCTCCCTCTCTCTTCGCACCTTCCCTCTCCGCCCCAAACCAACAACAACGCTTTCCGCTTCACTTTCTGCACTTCCAGCAAGTACGGATGGATCCAAAACTAAAGTTCGGCGCAAAACAACGAAGAGAATAGAAGGCCCTAGAAAAAGCATGGAAGACTCTGTTCAGCGCAAGATGGAGCAGTTTTACGAAGGCTCCGACGGCCCTCCGCTTCGCGTTCTCCCCATTGGCGGTTTGGGAGAAATTGGGATGAATTGCATGCTCGTCGGGAACCATGACCGCTATATCCTCATTGATGCTGGTGTCATGTTTCCAGATTATGACGAACTTGGAGTTCAAAAGATCATCCCCGATACCACCTTTATAAGAAAGTGGAGCCACAAGATTGAAGCGCTTGTTATTACTCATGGTCATGAAGATCATATTGGTGCGTTGCCTTGGGTCATTCCGGCATTGGATTCCAATACACCAATATTTGCATCATCCTTTACAATGGAGCTTATAAGAAAACGTTTGAAGGAGCATGGTATTTTTGTTCCATCTAGACTCAAGGTATTTAGAACAAGGAAGAAGTTTGTAGCTGGGCCATTTGAGATAGAACCCATTAGGGTGACACATTCTATTCCTGATTGTTGTGGACTAGTTCTTCGGTGTTCTGATGGTACTATTCTTCACACTGGGGACTGGAAGATTGATGAGACTCCACTAGATGGGAATGTTTTTGATCGTGAAGCTTTAGAGGAACTCTCTAAAGAAGGAGTAACATTGATGATGAGCGATTCAACAAATGTACTCTCACCTGGTAGGACAATCAGTGAATCTGCTGTAGCAGATGCATTATTGAGGCATATTTCAGCTTCTAAAGGAAGGGTTGTTACTACCCAATTTGCATCAAATCTACATCGGCTTGGAAGTGTAAAAGCTGCTGCTGATTTAACTGGCAGAAAGTTGGTATTTGTTGGCATGTCTTTACGGACGTACTTAGATGCAGCTTGGAAGGATGGAAAGGCTCCAATTGATCCATCCACTCTGGTGAAAGCAGAAGATATTGATGCTTATGCTCCAAAGGATTTACTAATTGTAACAACAGGTTCTCAAGCAGAACCTCGTGCCGCCTTAAACCTTGCATCTTATGGAAGTAGTCATGCTTTCAAATTAACCAAGGAAGATGTTGTTTTGTATTCCGCTAAGGTTATCCCTGGTAATGAATCTCGTGTGATGGAAATGCTAAACCGCATATCAGAGATTGGATCAACAATTGTTATGGGGAAAAATGAAGGTCTGCATACATCTGGACATGCATATCGTGGAGAATTGGAAGAAGTACTTAGAATAGTGAAGCCACAACATTTTCTTCCCATCCATGGAGAACTTTTGTTCCTGAAGGAACATGAATTACTTGGAAAATCAACTGGCATTCGACACACTGCTGTTATTAAGAATGGAGAGATGCTCGGTGTTTCACATTTGAGAAATAGAAGAGTACTTTCTAATGGTTTCATTTCCCTTGGAAAAGAGAATTTACAGTTGAAATATAGTGATGGCGATAGAGCATTTGGTACATCTAGTGAACTCTTCATTGATGAAAGATTGAGAATTGCTTTAGATGGCATCATTGTCATTAGCATGGAAATATTTCGCCCTAAAATTTTAGATCGTTTGGCTGAAAACACCTTAAAAGGCAAGATAAGGATTACCACAAGGTGCTTATGGCTTGATAAAGGGAAGCTAATGGATGCACTCTACAAAGCTGCTCATGCAGCTCTTTCAAGCTGTCCTGTAAAGAGTCCACTGGCTCACATCGAAAGAACTGTCTCTGAGGTATTGAGGAAGATGGTGAGGAAGTACAGTGGTAAAAGGCCGGAAGTTATTGCCATTGCTATAGAAAAACCTGCAGCTATTCTTGCTGATGAGATAAACACAAAATTGTCTGGCAAATCCCATGTGGGTCTTGGAATATCAACATCAAATAAAGCAGTGGATGGACATGGGAAGAAAAATCTGTCCACCACAGAGCAATTTAAAGGTGACACTAAGATTCTTGCATTCAACTCATCTATTAATGCAATTGACATGCATGGTTTGTGTACACTGCATCTGGCTTCACGCATGCACACTTGTGCATTTGAACACCCAGGTACAGATGATATTGATAATGAAACTGTAGCTGATCGTTTTTTATCTGAGAAATACAACACTGCAAGTGGAAATGAGGGTGATTTATCTGAGGAAGACAACACTGAAAGAGGAGCTGAGGGTGACTTATCTGAGGAAGACAACACTCCAAGTGGAGCTGAGGGTGATTTATCCGAGTCAGAGGATTCAGATGAATTTTGGAAACCCTTCGTTACATCATTACCTGTTGAGAAGTCAATTGGTGCCAACAATAGTTACCTTTCACAAAAGGAGCATAAGTCCAATATGAAGAAAAATGATTCTGAAGACATTGTTGAAGCAAAGTCTGAAGAAACGTCTAATTCTGAATCCAAGTCTTCAAAATCAGTTAAGAGAAATAAATGGAAAACTGAGGAAGTTAAGAAGCTGATTGCAATGCGCGGGGAACTACATGACAGATTTCAAGTTGTGAAGGGAAGGATGGCCCTCTGGGCAGAGATATCTCAAAAATTATTGGCTGATGGGATCAGCAGAAGTCCTGGACAGTGCAAATCTCTGTGGACATCTTTGGTGCTGAAATACGAGGGGATCAAGAATGAGGATAGCAAGAAAAGTTGGCAATATCTTAAGGAGATGGAAATGATAATGTCTGAGAAAGAAGCCCCTGCAACAAAATGATTGGAAATATGGTAGACAGGATAATAAATATTTTGGAGATAATCTCATGGTGGTGGGAAGATAATCGCATGCATGACTTTGAAGATCCATAGCTTTTGAGGGACAGACAATATAAAAGGGGTTGGCTTTCATAATCATACTAACACGGGAATATCTGGGTTGAGACGATTTATTCCCCACTTCAAGCACCTGCCCCCTTTTAACACTTGTCTAATATTATATTGCCTAATCATTTATTATTTTTGTTGGTAGCACATGTTGGGTGCCCTAAGCAACCATGGAAAATTGGAAATGTCTGCTGCATTTTCCCGACATTGAATAGGGAAAAGAAAGTTTTGATGCTTTTATTTGCCGGTACCAACTTAAATTCCTA 3307 0.4122 MSALTSLSLSLRTFPLRPKPTTTLSASLSALPASTDGSKTKVRRKTTKRIEGPRKSMEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNHDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWSHKIEALVITHGHEDHIGALPWVIPALDSNTPIFASSFTMELIRKRLKEHGIFVPSRLKVFRTRKKFVAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGNVFDREALEELSKEGVTLMMSDSTNVLSPGRTISESAVADALLRHISASKGRVVTTQFASNLHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHAFKLTKEDVVLYSAKVIPGNESRVMEMLNRISEIGSTIVMGKNEGLHTSGHAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLKYSDGDRAFGTSSELFIDERLRIALDGIIVISMEIFRPKILDRLAENTLKGKIRITTRCLWLDKGKLMDALYKAAHAALSSCPVKSPLAHIERTVSEVLRKMVRKYSGKRPEVIAIAIEKPAAILADEINTKLSGKSHVGLGISTSNKAVDGHGKKNLSTTEQFKGDTKILAFNSSINAIDMHGLCTLHLASRMHTCAFEHPGTDDIDNETVADRFLSEKYNTASGNEGDLSEEDNTERGAEGDLSEEDNTPSGAEGDLSESEDSDEFWKPFVTSLPVEKSIGANNSYLSQKEHKSNMKKNDSEDIVEAKSEETSNSESKSSKSVKRNKWKTEEVKKLIAMRGELHDRFQVVKGRMALWAEISQKLLADGISRSPGQCKSLWTSLVLKYEGIKNEDSKKSWQYLKEMEMIMSEKEAPATK 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00403 936 CDD GT1 844 909 - -
Pste2g00403 936 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 434 471 IPR011108 -
Pste2g00403 936 Gene3D - 278 428 IPR042173 -
Pste2g00403 936 SUPERFAMILY Metallo-hydrolase/oxidoreductase 77 491 IPR036866 -
Pste2g00403 936 MobiDBLite consensus disorder prediction 737 782 - -
Pste2g00403 936 MobiDBLite consensus disorder prediction 804 843 - -
Pste2g00403 936 PANTHER RIBONUCLEASE J 748 936 - -
Pste2g00403 936 Pfam Myb/SANT-like DNA-binding domain 843 925 IPR044822 -
Pste2g00403 936 ProSiteProfiles Myb-like domain profile. 838 902 IPR001005 -
Pste2g00403 936 Gene3D - 846 906 - -
Pste2g00403 936 Gene3D - 81 493 IPR036866 -
Pste2g00403 936 MobiDBLite consensus disorder prediction 25 54 - -
Pste2g00403 936 MobiDBLite consensus disorder prediction 748 762 - -
Pste2g00403 936 MobiDBLite consensus disorder prediction 809 843 - -
Pste2g00403 936 SMART Lactamase_B_5a 89 286 IPR001279 -
Pste2g00403 936 CDD RNaseJ_MBL-fold 80 491 - -
Pste2g00403 936 Pfam Beta-lactamase superfamily domain 100 236 IPR001279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00403 Pste-Chr2 3496303 3504776 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00403 845 928 Trihelix Transcription Factor Family AT2G38250 34.483 2.00e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pste2g00403 Lactamase_B_2 9.1e-10 CL0381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g00403 2 3496303 3504776 Pste2g00403 2 3496303 3504776 ECH
Pste6g01841 6 8449012 8466535 Pste2g00403 2 3496303 3504776 PCT