Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00372 GCGAAGTGCACAAAATTGTGAATTACAAACAAAAAGAGAAATAAAACATGAAGCTTGCTATAATCACGATATTTGTATCATTACTTCTAGTTAAATATTGTTTTGCTACATCTGGAAATCTTGACATATCGAGCTTTGGAGGAAAACCAAACTCAGATATATCAAAGGCTTTGTCAAGTGCTTGGACTCAAGCATGTGCATCAACAACTGCGGCCAAAGTTCTGATTCCATCTGGTACATATCAAATGGGTGCCCTAGAATTGAAAGGTCCTTGTAAGGCTCCTATTGAAATTCAAATTGATGGCACAATTAAAGCACCTGCAAACCCAGCGAGCAATGATGTAGCTTCTCAATTCCTGATGATTGGAAATGCTGACTCTATAACCGTGTCAGGTAATGGCGTTATTGATGGTCAAGGTGCAAATACTTGGAAACAAAATGATTGTCATAAAAATGCCGACTGCAAAGGGTTTACCATGAATTTAAGTTTTAAATTCCTCAACAATTCAATTGTCCGTGACCTTACTTCCAAGGATAGCAAAACCTTCCATTTCAATGTTATAAGTTGCAACAATTTCACTATTGATGGGTTAAAAATTTCTGCCCCGGACGAGAGCCCTAACACTGATGGGATCCACATTGCAAGATCTTCGAGTGTAAAGGTTATTAATACAAATATTGCTACTGGAGATGACTGTATCTCAATGGGTGATGGTAACAAGAATGTAACTATCGAAAATGTTGTTTGTGGACCTGGTCATGGCATTAGTGTTGGAAGCCTTGGGAAGTACAAAGATGAAGAGTCTGTAGAAGGTCTTCTAGTTAAGAATTGCACTTTCAAGGGAACTTTAAATGGTGTTAGGATTAAGACTTTTCCTAATAGCCAAATACAAATTTCAGTTACTGATATGCATTTTGAAGATCTTATCATGGATAATGTTGAGAACCCTATCATCATAGACCAAGAGTATTGTCCATTGGTGACAAAGTGCAGCACCCAGAGTCCATCAAAAATAAAGATAAGCAACATTTCATTCAAGAACATTAAGGGCACCACTAAAGCTACTCCAGAAGGAATTATTCTTGCTTGTAGCAGTGGTGTACCATGTCAGGGTATAACGATGGCCGATATTGATCTCAAATTCAATGGAGCTATAGCAAAAGCTAAATGTACTAATGTCAAGCCCACAATAACAGGAACTGCTCCTACTTGTGACGCT 1220 0.3795 MKLAIITIFVSLLLVKYCFATSGNLDISSFGGKPNSDISKALSSAWTQACASTTAAKVLIPSGTYQMGALELKGPCKAPIEIQIDGTIKAPANPASNDVASQFLMIGNADSITVSGNGVIDGQGANTWKQNDCHKNADCKGFTMNLSFKFLNNSIVRDLTSKDSKTFHFNVISCNNFTIDGLKISAPDESPNTDGIHIARSSSVKVINTNIATGDDCISMGDGNKNVTIENVVCGPGHGISVGSLGKYKDEESVEGLLVKNCTFKGTLNGVRIKTFPNSQIQISVTDMHFEDLIMDNVENPIIIDQEYCPLVTKCSTQSPSKIKISNISFKNIKGTTKATPEGIILACSSGVPCQGITMADIDLKFNGAIAKAKCTNVKPTITGTAPTCDA 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00372 391 Pfam Glycosyl hydrolases family 28 50 380 IPR000743 GO:0004650|GO:0005975
Pste2g00372 391 ProSitePatterns Polygalacturonase active site. 231 244 IPR000743 GO:0004650|GO:0005975
Pste2g00372 391 Gene3D - 19 389 IPR012334 -
Pste2g00372 391 FunFam Pectin lyase-like superfamily protein 15 388 - -
Pste2g00372 391 SMART pbh1 109 130 IPR006626 -
Pste2g00372 391 SMART pbh1 201 222 IPR006626 -
Pste2g00372 391 SMART pbh1 224 244 IPR006626 -
Pste2g00372 391 SMART pbh1 254 275 IPR006626 -
Pste2g00372 391 SMART pbh1 320 348 IPR006626 -
Pste2g00372 391 SMART pbh1 174 200 IPR006626 -
Pste2g00372 391 SUPERFAMILY Pectin lyase-like 10 387 IPR011050 -
Pste2g00372 391 PANTHER - 25 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00372 Pste-Chr2 3174154 3175730 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00372 3 385 Glycoside Hydrolase AT3G07820 47.013 6.26e-130 377