Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pste2g00329 | GTTTAAGAAACGGCTAAATATTTTGGTAGAGTCGTGTGCTTGTTCCGCCATCGCAAACCGAAAACCGCCGAAGCAGTTATGGCCGAAGCAGAACACGCGGATCCCACCTCGCCAGAGCACGAGGACCAAACCAAAAGCACCAAGAAGAAACTGCGCAAGAGAAAAAGACCAAACAAGACCGAACCGAAACTAGAGGAAGAGAAAAATGACACTAATATTGATAGCACTCAAACACAAACCCAAGAAGAAGACGAAGAGAAAGAAGAAGAAACAAACACCAACGATAACGCCTCATCTGGAATCATGAGCACCGAGTCTTTCTCCTCTCTTGGCTTATCCGAACCCACTTCCAAAGCCATTGCCGACATGGCCTTCCACCGTATGACTCAGATTCAAGCGAGGGCGATTCCGCCGCTGCTTACCGGAAAGGACGTTCTCGGCGCGGCGAGGACGGGTGCCGGAAAAACCCTAGCGTTTTTGGTACCGGCGGTGGAGTTGTTGCACAGTGTTCAGTTCACGCCGCGAAATGGAACCGGTGTTGTTGTGATATGTCCGACGAGGGAGCTCGCGATTCAGACGCACGCGGTGGCGAAGGAGCTGCTGAAGTATCATTCGCAGACGCTAGGGTTGGTGATTGGGGGTTCTGGGAGGAAGGGAGAGGCTGAGCGCATTGTGAAAGGGGTGAACCTGTTGGTGGCTACGCCGGGCCGACTTCTCGATCACCTTCAGAATACGAAGGGGTTCGTGTATAAAAACTTGAAGTGCCTCATGATCGATGAAGCCGACAGGATATTGGAAGCCAACTTTGAGGAGGAGATGAAGCAGATTATTAACATACTTCCAAAGAAAAGGCAAACAGCTTTGTTTTCAGCGACGCAGACAAAGAAGGTTGAGGATCTTGCTCGCTTATCTTTTCAGACAACTCCTATCTATATTGATGTAGATGATGGGAGAAAAAAGGTCACAAATGAAGGGTTGCAGCAGGGCTATGTTGTTGTTCCCTGTGCTAAGCGTTTTGTTGTTCTCTATTCATTCTTGAGGAGATATCAATCAAAAAAAGTGATGGTCTTTTTCTCTTCCTGCAATTCTGTCAAATTCCATGCAGATCTTCTCAAGTGTACTGGGATGGACTGCTTAAATATTCATGGAAAACAAAAGCAACATGCTCGGACAACTACATTCTTCAATTTTTGCAAAGCTGAAAAGGGGATCTTGCTTTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGATGTGGACTGGATTGTGCAATATGATCCACCTGATGAACCAAAGGAATATATCCACAGGGTCGGTAGAACAGCTCGTGGCGAAGGTGGAAAAGGAAATGCTTTACTTTTTCTGATTCCTGAAGAATTGCAATTTCTTCACTATTTGAAGGTAGCAAAGGTTCCTGTGAAAGAGTATGCATTTGACCATAAGAAGCTTGCCAATGTACAATCTCAACTGGAGAAGTTGGTGGCTGGCATTTATCATTTGAACGTTATGGCTAAAGATGCATATAGGTCATATATATTAGCATATAACTCACATTCTATGAAAGATATATTCAATGTTCACCGCCTTGATTTACAGGCTGTTGCTGCTTCATTCTGTTTTAGCAACCCACCGAAGGTGAATCTGAACATAGATAGCAGTGCTTCAAAGCATAGGAAGAAAATACGCAAAGTTGAAGGAAAGAGAAGATGATAAAAGGTAATTTGTGAAGCATTAGCAGCAGATATGTGATGGGCTGATCATTGGTCTGATTCTTATATTCTCTCACTCACAACACCCCATAAAGTTTTGGTAGGAACCTTGATTTAATACGAAGAGATGAATTTTATAACTTTATCAAACCTTAGTTATTAGAGGCATCAGAATTTTTTTAACTAGAGTGTTATGCAAATTTTTGAACTGTAATATTCATCATGACTACTGGTGTCCCGTCCTATGTAATATGGAAGCTTTAATTTTTGTTGTTGAAAGTTATATTTTCATCATTTTTTAAAGCAC | 2019 | 0.4314 | MAEAEHADPTSPEHEDQTKSTKKKLRKRKRPNKTEPKLEEEKNDTNIDSTQTQTQEEDEEKEEETNTNDNASSGIMSTESFSSLGLSEPTSKAIADMAFHRMTQIQARAIPPLLTGKDVLGAARTGAGKTLAFLVPAVELLHSVQFTPRNGTGVVVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGSGRKGEAERIVKGVNLLVATPGRLLDHLQNTKGFVYKNLKCLMIDEADRILEANFEEEMKQIINILPKKRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRKKVTNEGLQQGYVVVPCAKRFVVLYSFLRRYQSKKVMVFFSSCNSVKFHADLLKCTGMDCLNIHGKQKQHARTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLHYLKVAKVPVKEYAFDHKKLANVQSQLEKLVAGIYHLNVMAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSNPPKVNLNIDSSASKHRKKIRKVEGKRR | 544 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pste2g00329 | 544 | CDD | SF2_C_DEAD | 300 | 430 | - | - | |
Pste2g00329 | 544 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 151 | 441 | IPR027417 | - | |
Pste2g00329 | 544 | Pfam | Helicase conserved C-terminal domain | 315 | 419 | IPR001650 | - | |
Pste2g00329 | 544 | MobiDBLite | consensus disorder prediction | 1 | 84 | - | - | |
Pste2g00329 | 544 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Pste2g00329 | 544 | FunFam | RNA helicase | 296 | 526 | - | - | |
Pste2g00329 | 544 | SMART | DUF4217_3 | 460 | 523 | IPR025313 | - | |
Pste2g00329 | 544 | SMART | ultradead3 | 98 | 303 | IPR014001 | - | |
Pste2g00329 | 544 | Pfam | DEAD/DEAH box helicase | 103 | 274 | IPR011545 | GO:0003676|GO:0005524 | |
Pste2g00329 | 544 | Gene3D | - | 17 | 289 | IPR027417 | - | |
Pste2g00329 | 544 | Gene3D | - | 296 | 540 | IPR027417 | - | |
Pste2g00329 | 544 | Pfam | Domain of unknown function (DUF4217) | 461 | 521 | IPR025313 | - | |
Pste2g00329 | 544 | CDD | DEADc_DDX18 | 90 | 287 | IPR044773 | GO:0003724|GO:0005524 | |
Pste2g00329 | 544 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 79 | 107 | IPR014014 | GO:0003724 | |
Pste2g00329 | 544 | SMART | helicmild6 | 339 | 420 | IPR001650 | - | |
Pste2g00329 | 544 | MobiDBLite | consensus disorder prediction | 68 | 84 | - | - | |
Pste2g00329 | 544 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 231 | 239 | IPR000629 | - | |
Pste2g00329 | 544 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 110 | 285 | IPR014001 | - | |
Pste2g00329 | 544 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 315 | 469 | IPR001650 | - | |
Pste2g00329 | 544 | MobiDBLite | consensus disorder prediction | 32 | 46 | - | - | |
Pste2g00329 | 544 | PANTHER | RNA HELICASE | 31 | 460 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pste2g00329 | Pste-Chr2 | 2517270 | 2524539 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pste2g00329 | 79 | 438 | Eukaryotic Initiation Factors Gene Family | AT3G13920 | 31.507 | 2.72e-46 | 166 |