Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00305 TTTCTTTCTCTCTCAACCTACTACACACACTGTGATGGAGAGGAAGCCCCTATATTTGGCAAAATTAAATATTAAAATATTTGGTTGAACTTGTAAGAAGGAGCATATCATCCAGACCTTTCTCTCTGTCCTCCTTCTTCACTACTATCAACTGAAATACATTATCCACTCTACTGTGTCCACAAATCCATGACTTCATATTCTTTAAGTGTCTAGCAGGCAACGGGTGGCTGTTGAAAGCAGACCTGAGCATCACACTGCTGCTACTGTCTGCAAGTGCAAGTACTCTCTCTTCCTTCTCTCTATCACTTTTTTATTTTATTTCTTTTCTATTTTTGTGCTTCTTGTTGCTTCATTATGCCTTGTTTGGTAACCTTCTGAATTTGAGGTTCCATTTTCCTTGGAACTCTTCCTACTTGACTGTAGGAAAGTCAAGTCTTTATTTAATTACGCATATTTAACCCTCTGATGATGCTTTCTTCCTAGTACGGACAAAATCTTGTCCAATGTGTTTGTCTTATAATTGCCTCTTTGTGTCTGTCTAGTTTTTCATGATTTCCCTCTCCTCTATCTTCCATCACTTTCTATTCTTGTTCAATTCGACTTTTTACCCATGCTTTTTTCACTTGGGTTTTTATTTAATTTAACTTTGGTTCCTCTTGGTGTCTCACTATTTATATATACAATACAAGCTCCTACCTTGCTCACTACTTAATTTTTTGTTGCTCTTCATGCGATTGTGAATCATATGGTGTCACGCATATAGAAGGTAACCAAACAAACGCGGACCTTGAAGAAGTAGAGGGGGGAAGTGGAATTTTCTTTTTCTTTTTATTTTTTTTTATCATGGACTGGAATTTGAAAGCACCTTCTTGGGATTTGGTGGATATGGAAAAGGCAACCTTACAAAACATAGAAACAATGGAGGAGCAAAACAGATTTGGAGTGTATAGAATGAAGGGAGAGTTTTCTGTTGACTTGAAGCTTGGTCAGGTGGGGAATTCTGGCAATGAATCAGCAGTAGCCAAGTCCAAAGATGTTGGAACTGGAGGTGGAATCTCCAAAGTGGCATCTTCACCTTCAGGGTCTTCTAAGAGAGCTAGAGCCATTAACAGCTCATCCCTCACAGTGTCATGCCTTGTGGATGGGTGCAATTCAGATCTTAGCAATTGTAGAGATTATCATAGGCGCCATAAGGTGTGTGAACTCCATTCCAAGACACCAGAGGTCACAATTAGTGGCCTCAAGCAAAGGTTCTGCCAACAATGTAGCAGGTTCCATTCGCTGGAGCAATTCGATGAAAGAAAAAGAAGCTGCAGAAAACGTTTAGATGGACACAATAGAAGGAGAAGAAAGCCACAGCCAGAACCTCTAACACGACCTGGTAGTTTTTTGTCCAATTACCAAGGCACCCAATTGCTACCATTCTCAAGTCAACATATATATCCTTCCACGGCCATGTTGAGCCCATCATGGAGTGGTGGACATGTCACTTCCTCTGCAGATGCTAGGCTGCACAACCAACAAGTGCATTTGGTTGACAAACAAGACCTTTTTCTGGGATCTTCTCACAAAGAAGGGAAGCAAGTAGCATTCTTACACAGTAACACAACTGCAATGAGCAACCAAACCCCACCTTTCCCATCTGCTTCTGTGTGCCACTCGCTTCTCAGGACCACACCTCTATCAGAAACAGTGAGAAGCAAAATGTTCTGTGAAAACTTAACAAGTAATAATTCGGTGCATGACTCTCCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACGCACACAGCAGGGAATGGTTTGAATCAAATGGTGCAGCAGCCTCCTTCGATGTCCCTCATGCAACCCTTAGGGCTGAGCTTGCAGGATAGCAGCCTTGACTCAGTGGAGCGATCGGTTTTGGTTCCCAATGGGAGTGACCATTGTTCCTCCATGTATAGCTTGGGTTCTGATGGGTCACAGTGCAACGACGGCCCTCAACTGTTTCCCTTTCAATGGGAATAGAATAGACCATTTTCATCGTAAGGATTCACTCTTTGTTTTGTTTGTTCATTCCTCATGAATTCTTTTCCCCTACAGACTAGTTAATTCTCTCATTCACCCTCCCCCCTTTAATCAAGGCAATGACTCTGGACAATGGTAACGTTTTTCTAATTTTATCTTCACTAGGGAAAGAAAAACTCAACAATTTTACACGTGATTCAAGATGG 2216 0.4152 MDWNLKAPSWDLVDMEKATLQNIETMEEQNRFGVYRMKGEFSVDLKLGQVGNSGNESAVAKSKDVGTGGGISKVASSPSGSSKRARAINSSSLTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTISGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPLTRPGSFLSNYQGTQLLPFSSQHIYPSTAMLSPSWSGGHVTSSADARLHNQQVHLVDKQDLFLGSSHKEGKQVAFLHSNTTAMSNQTPPFPSASVCHSLLRTTPLSETVRSKMFCENLTSNNSVHDSPCALSLLSSSQTHTAGNGLNQMVQQPPSMSLMQPLGLSLQDSSLDSVERSVLVPNGSDHCSSMYSLGSDGSQCNDGPQLFPFQWE 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00305 387 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 51 373 IPR044817 GO:0003677
Pste2g00305 387 Gene3D - 88 158 IPR036893 GO:0003677|GO:0005634
Pste2g00305 387 SUPERFAMILY SBT domain 95 176 IPR036893 GO:0003677|GO:0005634
Pste2g00305 387 FunFam Squamosa promoter-binding-like protein 14 88 158 - -
Pste2g00305 387 Pfam SBP domain 97 170 IPR004333 GO:0003677
Pste2g00305 387 ProSiteProfiles Zinc finger SBP-type profile. 94 171 IPR004333 GO:0003677
Pste2g00305 387 MobiDBLite consensus disorder prediction 54 84 - -
Pste2g00305 387 MobiDBLite consensus disorder prediction 158 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00305 Pste-Chr2 2238779 2243205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00305 1 387 SBP-box Gene Family AT5G50670 39.900 2.87e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pste2g00305 SBP 4.6e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g00305 2 2238779 2243205 Pste2g00305 2 2238779 2243205 ECH
Pste3g01142 3 7309872 7313468 Pste2g00305 2 2238779 2243205 PCT