Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00271 ATGAAAGATTCCGCGGAAACGGATCCTATTGCTATCACCGATTCCCTCACTACCCTCCTCCACTCTGAACTCCCCAGCGTCAGAAACTTCAAAGGGAAATGGTCACTGGCGCGAGTCAAACTCACCCAACTCCAAACCCACCTCACCGATTTCTCCGCCGAGTTCCCCGACGCCTCCACCACAAACCCACTCTCCCTTCACCTTCTCCACTCCATCTCGCGAACCCTTAACCATGCTGTTTTGCTGGCCCGCACGTGCCAGCCCCAAGACCTTCCCAACGGAAAACTCAAAACCCAAAGCGACCTAGACTCCCTCCTCGCGACCCTCGACCGCCACGTCACCGACTGCGACATCCTCTTCCGCAGCGGCCTCCTCCTCGAAACCCACGCCGCCGTTTCCACCTCCTCTAAACGCGAAGCCATCCGCTCCGCATCGCGAAACCTAATCACCCGTCTCCAAATCGGGTCGCCCGAGTCCAAAACCTCCGCTATGGACTCTCTATTGGGCCTCCTCCAGGAAGACGACAAAAACGTCACTATAGCTGTGGCCCAGGGAGTTGTTCCTGTGCTCGTGCGCCTACTTGATTCCCCCTCCGACATGAAGGAGAAAACCGTCGCCGCCATTTCCAAAGTCTCCACCGTTGAGAGCGCCAAAACCGTTCTCCTCGCCGAGGGTTTGCTTCTTCTCAACCACCTGCTTCGGGTCCTCGATTCCGGAAGCGCCTTCGCCGTTGAGAAAGCGTGCATCGCTCTTCAAGCGTTGAGTCTCACAAAGGATAATGCTAGGGCCATTGGTTCGCGCGGCGGAATCTCGTCGCTGCTGGAGATTTGCCAGGCTGGCACCCCCGGCGCACAGGCCTCTGCCGCCTCGGTGCTCCGCAATCTCGCCGCGTTTTCCGAAATTAGAGACAATTTCGCTGAGGAGAACGCCGTGGGGGTTCTTATTGCATTGGCTTCCTCCGGCACCGCGTCGGCGCGTCAGAACGCGATTGGGTGTTTGGCGAATTTGATTTCCGAGTCCGATTCCGAGGGTTTGGCGAATTTGAGGGTTATGGTGATTAAAGAAGGCGGCGTTGAGTGTTTGAAGAATTACTGGGACTCGGGGACACCAATTCCGAGTCTTGAAGCCGCTGTGGAGATGCTGCGGCATTTGGCTCAGAATGCTGCAATTGGCGAGGTTCTCGTGGGTGATGGGTTTTTGCAGAGACTTGTGGGGGTGCTGAATTGTGAAGTTCTGTCGGTGAGGATTGCGGCAGCGAAGGCAGTTTATGCGTTGGGGTTGAACAGTGGGAGGGCGAGGAAGGAGATGGGGGAATTGGGTTGTGTTTTGGGTTTAATTAAAATGCTTGATGGGAAGGGTGTGGAGGAGAAGGAAGCTTCTGCAATGGCATTGTCGGTGCTGCTCATGCACCCTGGAAATCGGAGAATTTTCCGCAAGGACGAAAGAGGGGTTGTGAGTGCTGTTCATCTCTTGAACCCTTCATTGCAGCGGTTGGATAAGAAGTACCCTGTTTCATTGCTTTCCTCGCTTGTGCATTCCAAGAGTTGCAGAAAGCAAATGGTGGCAGCAGGGGCTTGTGTATATACGCAGAAGCTTGTGGACATGGATGTGCCTGGATCAAAGAAACTCTTGGAGAGTCTCGGGCGTGGTAAGATTTGGGGTGTTTTTGCTAGACCCTAG 1680 0.5494 MKDSAETDPIAITDSLTTLLHSELPSVRNFKGKWSLARVKLTQLQTHLTDFSAEFPDASTTNPLSLHLLHSISRTLNHAVLLARTCQPQDLPNGKLKTQSDLDSLLATLDRHVTDCDILFRSGLLLETHAAVSTSSKREAIRSASRNLITRLQIGSPESKTSAMDSLLGLLQEDDKNVTIAVAQGVVPVLVRLLDSPSDMKEKTVAAISKVSTVESAKTVLLAEGLLLLNHLLRVLDSGSAFAVEKACIALQALSLTKDNARAIGSRGGISSLLEICQAGTPGAQASAASVLRNLAAFSEIRDNFAEENAVGVLIALASSGTASARQNAIGCLANLISESDSEGLANLRVMVIKEGGVECLKNYWDSGTPIPSLEAAVEMLRHLAQNAAIGEVLVGDGFLQRLVGVLNCEVLSVRIAAAKAVYALGLNSGRARKEMGELGCVLGLIKMLDGKGVEEKEASAMALSVLLMHPGNRRIFRKDERGVVSAVHLLNPSLQRLDKKYPVSLLSSLVHSKSCRKQMVAAGACVYTQKLVDMDVPGSKKLLESLGRGKIWGVFARP 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00271 559 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 15 557 - -
Pste2g00271 559 SMART arm_5 298 338 IPR000225 GO:0005515
Pste2g00271 559 SMART arm_5 257 297 IPR000225 GO:0005515
Pste2g00271 559 SMART arm_5 174 213 IPR000225 GO:0005515
Pste2g00271 559 SMART arm_5 428 469 IPR000225 GO:0005515
Pste2g00271 559 Gene3D - 369 547 IPR011989 -
Pste2g00271 559 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 185 226 IPR000225 GO:0005515
Pste2g00271 559 Gene3D - 134 368 IPR011989 -
Pste2g00271 559 SUPERFAMILY ARM repeat 147 487 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00271 Pste-Chr2 1898339 1900018 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00271 143 322 U-box Gene Family AT1G23030 28.177 1.47e-11 65.1