Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00266 ATGGCAGCTTTTTCATACCAATACCACCCTTTTCTTGTTGACCCTGCATTCTTCCCCAACCACATAAACCCTCCTTCTCCTCCTCCTCAGTTTCATCTCCCTCAGGAAACATGTTTTAATGTCACAAACCAGGAGACTAGCTGTGTCGACCAAAGCTCCAAGATCACCATCAGTGACAATGAACCTTCTGTCACTAAAAACCTTAGTCCTCAGTCCTCCATGGTAGTGGACAAGCTTGAAACTGGTGAACAGGATACTGCAGCAGAAGGGAGAAGTAAGAAGCAAAGGAAGAACAATGGTGGGGTGAAAGAAGAGGACAAGGCAAAAGAAGAGAAGAAGGATCAGAGAAAATGTCCTGAAGAGCCTCCAACAGGCTATATCCACGTCAGAGCAAGAAGGGGTCAGGCAACGGATAGCCACAGCCTTGCTGAAAGGGTGAGAAGAGAGAAGATAAGTGAAAGGATGAAGGTGTTGCAACGGCTTGTGCCAGGCTGTGATAAGGTGACTGGAAAGGCTCTTATGTTGGACGAAATAATCAACTATGTTCAGTCTTTACAGAATCAAGTTGAGTTCTTGTCAATGAAGCTTGCTTCCGTGAATCCCATGTTTTATGACTTGGCAACGGATCTGGATACACTCTTGGTTAGACCAGAGAAGGTAAACAACATGACATCACCATCACCAGTACCATCAGTGTCACATTGCAACAGCCCCAACCAAGCCACAAGTTTTGCTGATACAACCACCATGACTCCCACCAACATCTTCCACACTGCTAGTGACTATCTTTTGGATAATTCAGCTTCGTTTGTTATTCAAGGGCAGAGGTCAAATGTGTTCTCTGAGGAGGATACCGGTTGTCATTTTTGGGACGCAGAGTACCAGCGACAAAAGTTTCTTCATCCATATGGATTCAGCAACAACTTATGTACCTTTCATTAATATTAAAATTCACAAAGCTGCCCTACAAAACTAAGAACATGTTGATTTAGCTTTTACACTAGGTAAGGAAGTTCCAAAAGAGGCACGAGAATGAGGCAAAAAGGAAATTAGGAGTTAGGACGAAAAACCAAAGCTACTTTTGGTATCAGTATAAGTACATCATTTCTGAGTAATTCGTGGCGTAAAGAGTCTGGATTGGTTCCTAGTCCATTAGATTAAAGTAGCCTTTGAAGATGAATAAATTAAAGGGCACCAAAATTAATGGATGAAGAACCACAAGGACACAAAATACCGACCAAATAAGACCATATCTTTTCTAGATCCATTGTTCTGTTTCAGTGATTTTTGACTCTCCAAGGACTTATGATGCACAAATTCCGAGAGACTATCAATCCTACATACAGAGCAGACATTGAAATTTATGTCATGTAAATTATCAAAGTATTGATTCTTGTGGTGGCAGTTATTCTGTTGGTACAGTTAATTTTCACCATTATTGAGAAATGAGGGGTTGATGCTACTGATCATGTTCTTGACATGACTAGCCATGCATTTGTTTGTTGTTGGTCTAGTTAGCTTTTATGTATATGTATCTGCAGAATCTTCAGAGTTTGGC 1558 0.4121 MAAFSYQYHPFLVDPAFFPNHINPPSPPPQFHLPQETCFNVTNQETSCVDQSSKITISDNEPSVTKNLSPQSSMVVDKLETGEQDTAAEGRSKKQRKNNGGVKEEDKAKEEKKDQRKCPEEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKVLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMFYDLATDLDTLLVRPEKVNNMTSPSPVPSVSHCNSPNQATSFADTTTMTPTNIFHTASDYLLDNSASFVIQGQRSNVFSEEDTGCHFWDAEYQRQKFLHPYGFSNNLCTFH 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00266 313 SMART finulus 141 191 IPR011598 GO:0046983
Pste2g00266 313 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 133 202 IPR036638 GO:0046983
Pste2g00266 313 CDD bHLH_AtBPE_like 125 210 - -
Pste2g00266 313 FunFam Basic helix-loop-helix transcription factor 132 204 - -
Pste2g00266 313 Gene3D - 132 205 IPR036638 GO:0046983
Pste2g00266 313 Pfam Helix-loop-helix DNA-binding domain 139 186 IPR011598 GO:0046983
Pste2g00266 313 MobiDBLite consensus disorder prediction 82 126 - -
Pste2g00266 313 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 57 243 IPR024097 GO:0006355
Pste2g00266 313 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 185 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00266 Pste-Chr2 1775289 1777958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00266 1 268 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 45.965 3.50e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste2g00266 HLH 1.7e-06 No_clan