Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00255 AAAATAACAGTAAAGAGTGAGAGTGTGTTGGAGTTCCACGTGTACAAGGAAGGAAGCAGAAGAAGAAGAAGAGAGAAGAGAGAAGAGAGAAGAGAGAAGAGAGGAAGAAGGGATAGAAAGGGTGAGGGTGAGTGTATGTGATCCTCTTCTCATCATTTGGTGCTACGGGGGAAGCGGTGGTTGGTTGGAGTAGTGTAAGGTTCAGTTACAACTATTTCTCTCTCTCTGAAGGGCAAGGGCAAGGGCAAAGGCAAAGGCAAAGGCAAAGGCAATGCCCTTTTCCTTCTGCAACGTCCTCTTCCTTTAACTCCCCTCTTTTCCCCTTAGAAGCAGCCAAAAGGAAAGGGTGGTTTGATAAGTGAAACGGAAAGAAGAGCGAGATAAGCATGATGTCTGGAAGCTGGATGGAGGAACGGCAAGACGACAACACAGGTTTTGGCGAAAACACAAACCGCGGCACGGACGAGTTGGCCTCTCTCTGCGCCTTTAAACCGATGTTGGAACTGGACGAGGAATGGTACATGAGTAACCAGCACAACCAAGACATGTCTTTTTCCCCCAACTTCCCAGAGGCAGAGCCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGACAACCTCTTACTGAACGCTGTGGACTGTTCCTCCTCCGTCTTCAACACCCTCGACCCCCACATCCACTATTTTCTCCCTCCCAACCCCAAACCACTCAACCCCTTCGATATGCCCTTTCTTGACCCTCAAGCTTCCTCCTCTCTCCCCTTACCTCCTCCTCACTCTTTCGCCGGCTTTCACACCCTCCACGACCGCTCCAACATTCTCCGCCCTCTTCAATCTTTCCCTCCCTCCGGTGCCCCCCCCACTCTCTTTCAGAAGCGCGCTGCCCTCCGCAAAAACATCTCTCTTCCCAAAATGAAGGACAAGGACACTCACACCCACAAGGACCTCCTCGACGATGCCTCTGCCTTCAACTATGATTCTGATGATTTGACTGACAGTAACAATAATAACACCTCCATTCTCCACCACCCTGCTTCTAAGAACTGTGCCAACAGCTCCAATGCCAACAGCACCGTCACCGCTTTCGATCACAAAGGCAAGAAGAAGGGAATGCCCGCTAAGAATTTGATGGCCGAACGCCGCCGCAGGAAGAAGCTCAACGACAGACTCTACATGCTCAGGTCCGTTGTTCCTAAAATCAGCAAAATGGACAGGGCTTCCATTCTTGGAGATGCAATTGAGTATCTTAAGGAGCTTCTCCAACGGATCAATGATCTTCATAACGAGTTGGAGTCCACCCCTGCTGGTTCTGCACTCACTCCTGCATCAAGTTTCCATCCTTTGACTCCCACTCCTCCTACGCTGCCTAGCCGTATCAAAGAAGAACTTTGCCCCACCTCATTGCCAAGCCCCAATGGCCAACCTGCTAGGGTTGAGGTTCGGCAGCGCGAAGGAAGGGCTGTTAATATTCACATGTTTTGTGCCCGCAAACCCGGTCTGTTGCTCTCAACCATGAGGGCTTTGGATAACCTTGGATTGGACATTCAGCAGGCAGTTATTAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCTGAGCAATGCAAAGGAGGTCAGGAGGTCCATCCGGAGCAAATCAAAGCAGTTCTCTTGGATTCCGCTGGATACAATGGCATGATGTAACTAGTTTTGACAAGAAACAAGCTAGAAGCTGCCATTTCACAGTAAATTTAGCAAGTTTAATCAGTTTTTGCTTTTAATGTCACAATTCAAGTGTACGATACTAGTTCTGTCACTTCAGTTTAAGTTGAGGTCGAAGAAATTTTCTCATGAATTTACCCCGGCAGCAGTAGTTACTGTTTGGTACGTTTCACATGTTCATGTCGAACCGAAAGTTGATGCTACTGTCTTCGAGTTCAATTAGTTCAGAGACCATTCTGAAGGCGCGTTTTGACGTTAAGTTTGTATTTATAATTGTCCAACCTATTGTCCTCTTTATACGGTTTTCAACAAGGACAAAACTTTAAAGCGACTTTCTTTTTTGGTGTTTTTCC 2068 0.4802 MMSGSWMEERQDDNTGFGENTNRGTDELASLCAFKPMLELDEEWYMSNQHNQDMSFSPNFPEAEPEAEAEAEAEAEAEADNLLLNAVDCSSSVFNTLDPHIHYFLPPNPKPLNPFDMPFLDPQASSSLPLPPPHSFAGFHTLHDRSNILRPLQSFPPSGAPPTLFQKRAALRKNISLPKMKDKDTHTHKDLLDDASAFNYDSDDLTDSNNNNTSILHHPASKNCANSSNANSTVTAFDHKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPAGSALTPASSFHPLTPTPPTLPSRIKEELCPTSLPSPNGQPARVEVRQREGRAVNIHMFCARKPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDIFRAEQCKGGQEVHPEQIKAVLLDSAGYNGMM 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00255 436 CDD bHLH_AtAMS_like 248 312 - -
Pste2g00255 436 Gene3D - 239 309 IPR036638 GO:0046983
Pste2g00255 436 Pfam Helix-loop-helix DNA-binding domain 252 294 IPR011598 GO:0046983
Pste2g00255 436 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 248 313 IPR036638 GO:0046983
Pste2g00255 436 Coils Coil 284 308 - -
Pste2g00255 436 MobiDBLite consensus disorder prediction 307 333 - -
Pste2g00255 436 CDD ACT_UUR-ACR-like 365 425 - -
Pste2g00255 436 MobiDBLite consensus disorder prediction 51 75 - -
Pste2g00255 436 MobiDBLite consensus disorder prediction 1 24 - -
Pste2g00255 436 SMART finulus 251 300 IPR011598 GO:0046983
Pste2g00255 436 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 85 433 - -
Pste2g00255 436 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 245 294 IPR011598 GO:0046983
Pste2g00255 436 FunFam BHLH transcription factor 241 309 - -
Pste2g00255 436 MobiDBLite consensus disorder prediction 211 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00255 Pste-Chr2 1618536 1622211 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00255 137 409 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 63.830 4.14e-110 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste2g00255 HLH 1.5e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g00470 7 4473997 4475363 Pste2g00255 2 1618536 1622211 ECH
Pste2g00255 2 1618536 1622211 Pste2g00255 2 1618536 1622211 ECH