Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00253 ATGGCATCATCAGAGGTGACGATGAAGGGAAATTGCTTGAACCATAACGACGCCGGAGCTACGGAGGCTCATTCGCCGCCCACGGCCAAAGACGCAGAAGCTGCACTTTTCAGGGAACTGTGGCACGCCTGCGCCGGTCCTCTCGTCACGGTACCACGCGAAAGAGAGCGCGTCTTTTATTTTCCTCAGGGACATATCGAGCAGGTGGAGGCTTCGACGAATCAGGTGGCGGACCAACACATGCCGGTTTACGATCTCCCACCCAAGATCCTTTGTCGGGTCATCAACGTGCAGCTGAAGGCCGAGCCCGACACGGATGAGGTGTTTGCGCAAGTGACTTTGCTTCCGGAGCCAAATCAAGATGAGAATGCCGTGGAGAAAGAACCTCCGCCGCCACCGCCTCCGCGGTTTCATGTTCACTCTTTTTGCAAGACTTTGACGGCATCCGATACGAGTACCCATGGTGGGTTTTCCGTGCTGAGACGACATGCTGATGAATGTCTTCCTCCTCTGGATATGTCGAAGCAGCCCCCCACCCAGGAATTGGTGGCGAAGGATCTTCATGGGAATGAATGGCGATTTAAACATATCTTTCGGGGTCAACCCCGTAGGCACTTGCTTCAGAGTGGTTGGAGTGTTTTTGTCAGTTCCAAAAGGCTTGTCGCTGGGGATGCATTCATATTTCTTAGAGGTGAGAATGGGGAACTTCGTGTTGGTGTTCGACGAGCAATGAGGCAACAGGGTAATGTTCCATCCTCAGTTATCTCCAGCCACAGCATGCATCTCGGGGTACTTGCAACTGCTTGGCATGCCATCTTGACGGGGACCATCTTCACTGTTTATTACAAGCCTAGGACTAGTCCCGCTGAATTTATTGTTCCATATGACCAATATATGGAATCTCTCAAGAACAATTATAGCATCGGGATGCGGTTTAAAATGAGGTTTGAAGGTGAAGAGGCTCCAGAGCAGAGGTTTACTGGTACCATTGTTGGAATAGAAGATTCTGATCCCAAAAGGTGGAGAGATTCCAAATGGAGATGCCTGAAGGTGAGATGGGATGAAACATCTAACACACCTCGTCCTGAGAGAGTTTCCCCTTGGAAAATAGAGCCCGCTCTTGCTCCTCCAGCTCTAAATCCTCTTTCAATGCCAAGGCCTAAAAGGCCTCGGTCTAATGCAGTTCCTTCGTCCCCAGATTCTTCCGTCCTTACTCGAGAAGCATCATCTAAAGTAAGTATAGACCCTTCACCAGCAAATGGGTTTCCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTGCTGAAAGTAATGACTCTGATACTGCTGAGAAGTCTGTTGCTTGGCCACCTGCTGCAGTAGAGGATGAAAAGATTGATGTTTCTACTTCAAGGAGGTATGTTTCAGAGAGCTGGATGTCAATGGGGAGGAATGAGCCTACATATTCAGATCTTCTTTCAGGTTTTGGGGTCAATGGGGATCAAATGAGCCCTGTAGCGTACCCCGCTAGAAAGCAATCATTGGATAATGAAGGCAAACTTCACATGCCTCATCCATGGCCTGTAATGCCCTCTAGTTTGTCATTGAACATCTTGGACTCCAATGGAAAAGGTCCTGCACACGGTGGTGATACAACTTACCAAGCTCGAGGGAATTTGAGGTACAGTGCATTTGGTGAATACCCTGCACTACATGGTCATAAAGTTGAGCATTCACATGGAAACTTGATGCCACCACCACCTTCGCCCTTAACTCAATATCAGAGTCCTTGTTCTAGAGAGCTTATGTCAAAACCAGTATTAGCAAAAACTTGTGAGGCTGCAAAACCAAAAGATGGTGACTGTAAGCTATTTGGCTTCTCTCTTATCAGTGGCCACATTGTACCAGAGCCTTCTGTATCACAAAGAAATGTGAGCGAGCCTGGTCAGATGCATCTTACACCAAACCAGCAAAGAACATCTGAAAATGATGAGAAGTCAGAACACTCGAAGTGCTCACGACCTGCAGATGATCTAGTTGTCGGTGATGACCATGACAGATCATTACAGACTTCTCAGCTGCATACAAAGGATGTTCAAGCTAAAGCTCTCAGTGGTTCTTCTAGGAGTTGCACTAAAGTTCACAAGAAGGGCATTGCACTTGGTAGGTCGGTGGACCTTACAAAGTACAGTGGCTATGATGAATTTGTCGCTGAATTGGATCAGCTGTTTGAATTTGGGGGTGAATTACTGACGACTAAAAAAGATTGGCTTATTGTCTACACCGATAATGAGGGTGATATGATGCTTGTAGGCGATGATCCATGGCAGGAATTCTGTGCCATGGTTCGCAAAATTTATATCTACCCTAAAGAGGAGATCCAGAAAATGAGCCCTGGTACCTTGAGTTCAAAAAATGAAGAGAACCAGCCTGTTACGGCCAGTGAAGGTGCAGATGCAAAAGATGTTAAATCTCAGCTGCATCAAAAGTTCAATTCAGAAAATGGCCTTGACGCCTGATGATTAGATTGATTTCCATACCTTTCAGATTCCGGGCTGGAAAGTAGGGAACTGTCATGAAGCCATCCAGTTGGAGAAACATAACTTGAAAGATGAATTGTAATCGAGGCTGGCTGCTTGGAATCAATATATAGATGGCATAAAAGAAAGAGTATCCGTCCAATTTTGGAAATCCCGGAATTAGTAGTATATGTCTGCCTAGTGATACAATGTAATCGATTGTGTTTTGAGCGAGGTGGTATGGGGTGATATCAACCTTGCGTTTTTAAACAATCCCACCTTCTAGTTGTACATAGTTGTTTCCCTTCTACCCTACCCTTTGAACAACAACCCCTTTAATGTAATGAAATTCGTATACAAGGGCAGCCTTATGGTTGGTATCCACGTTATTTGATTTCAATTTTGATTCTTATTAATCATAATTTGAGATGGAAATTCCATTCTGCATGATGTATAATTAAATTAA 2977 0.4558 MASSEVTMKGNCLNHNDAGATEAHSPPTAKDAEAALFRELWHACAGPLVTVPRERERVFYFPQGHIEQVEASTNQVADQHMPVYDLPPKILCRVINVQLKAEPDTDEVFAQVTLLPEPNQDENAVEKEPPPPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFKHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTIFTVYYKPRTSPAEFIVPYDQYMESLKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDPKRWRDSKWRCLKVRWDETSNTPRPERVSPWKIEPALAPPALNPLSMPRPKRPRSNAVPSSPDSSVLTREASSKVSIDPSPANGFPRVLQGQEFSTLRGNFAESNDSDTAEKSVAWPPAAVEDEKIDVSTSRRYVSESWMSMGRNEPTYSDLLSGFGVNGDQMSPVAYPARKQSLDNEGKLHMPHPWPVMPSSLSLNILDSNGKGPAHGGDTTYQARGNLRYSAFGEYPALHGHKVEHSHGNLMPPPPSPLTQYQSPCSRELMSKPVLAKTCEAAKPKDGDCKLFGFSLISGHIVPEPSVSQRNVSEPGQMHLTPNQQRTSENDEKSEHSKCSRPADDLVVGDDHDRSLQTSQLHTKDVQAKALSGSSRSCTKVHKKGIALGRSVDLTKYSGYDEFVAELDQLFEFGGELLTTKKDWLIVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSPGTLSSKNEENQPVTASEGADAKDVKSQLHQKFNSENGLDA 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00253 836 Gene3D - 702 795 - -
Pste2g00253 836 MobiDBLite consensus disorder prediction 795 810 - -
Pste2g00253 836 SUPERFAMILY CAD & PB1 domains 706 783 - -
Pste2g00253 836 FunFam Auxin response factor 305 377 - -
Pste2g00253 836 Pfam AUX/IAA family 747 793 IPR033389 -
Pste2g00253 836 MobiDBLite consensus disorder prediction 636 655 - -
Pste2g00253 836 MobiDBLite consensus disorder prediction 1 27 - -
Pste2g00253 836 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 35 795 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pste2g00253 836 MobiDBLite consensus disorder prediction 656 680 - -
Pste2g00253 836 MobiDBLite consensus disorder prediction 636 680 - -
Pste2g00253 836 Gene3D - 139 244 IPR015300 -
Pste2g00253 836 ProSiteProfiles PB1 domain profile. 706 788 IPR000270 GO:0005515
Pste2g00253 836 ProSiteProfiles B3 DNA-binding domain profile. 142 244 IPR003340 GO:0003677
Pste2g00253 836 Gene3D - 305 375 - -
Pste2g00253 836 MobiDBLite consensus disorder prediction 394 416 - -
Pste2g00253 836 MobiDBLite consensus disorder prediction 795 836 - -
Pste2g00253 836 CDD B3_DNA 140 242 IPR003340 GO:0003677
Pste2g00253 836 Pfam B3 DNA binding domain 142 243 IPR003340 GO:0003677
Pste2g00253 836 SMART B3_2 142 244 IPR003340 GO:0003677
Pste2g00253 836 Pfam Auxin response factor 268 350 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pste2g00253 836 FunFam Auxin response factor 140 244 - -
Pste2g00253 836 FunFam Auxin response factor 702 795 - -
Pste2g00253 836 SUPERFAMILY DNA-binding pseudobarrel domain 138 271 IPR015300 -
Pste2g00253 836 MobiDBLite consensus disorder prediction 376 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00253 Pste-Chr2 1613549 1618013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00253 1 822 B3 DNA Binding Superfamily AT5G62000 63.815 0.0 1063
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pste2g00253 B3 1.5e-21 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g00253 2 1613549 1618013 Pste2g00253 2 1613549 1618013 ECH
Pste3g01276 3 8036430 8041503 Pste2g00253 2 1613549 1618013 PCT
Pste2g00253 2 1613549 1618013 Pste6g01802 6 8237075 8239535 PCT