Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00247 ATGTTCCGGCAACAGCTCCAGTGCATGGAAGAGAGTTCAGAATCGTTACGCTCGAGATGTTTCAAGTTCTACAAAGGAAGTCGAAAGGAAGGGCTTGGAGAGGCATATGATGGAGACGTTGCATTTGCAAATGCCCTTGAAAGTTTTGGAGGAGGGCATGCTGATCCTTTATTTGTAACTTTGGGAGGACCTGTCATGGCTAAATTTGCTATGGCTTTGAAAGAAATCAGTACATACAAGGAACTTCTGCGGTCACAGGCAGAGCACATGGTGAATGACCGGTTACTTAACATGCTAAACGTCGATATCCTAGATGTCAAGGAAGCTAGAAGGCGTTTTGAGAAAGCTTCCCTTGTACACGATCAGGCACGTGAGAAGTTTATGTCATTGAGAAAAAGCACTAGGATTGATATTGCCACTGTCGTAGAAGAGGAATTGCACAATGCAAGAACCTCGTTTGAGGAGGCTCGTTTCAATCTGGTTAGTGCTCTGCATAGTGTTGAGGCCAAGAAGAGATTTGAGTTTTTGGAGGCTGTTGCTGGAGTTATGGATGCTCATCTTCGGTATTACCGACAGGGATATCAGCTATTACAAGACCTGGAGCCTTTCATTATCGAGGTTCTGGCTTATACACAGAAAGCAAGAGAAAGTTACAATGATGAGCAGATTAGTCTTTGTGAAAGAATGCTGGAGTACAAAAAACATGTTCATCATGAAAGTATGATGTCCTTGAATGGCCCTTATATCTCTCCCAGTAAAGATGGTCAAGTGCAGCCTTTTTCTAGAATATCAAATAAAGTGGCAGATGCTGTAACAGAATCTGCTGAAAATGGAAAGGTTCAAATCATTCGGCAAGGATTTCTCTCTAAAAGGTCCTCAAATTTGAGGGGTGATTGGAAGAGAAGGTATTTTGTCCTAGATAGTCGCGGAGTGCTTTACTACTTTCGTAAAGCATGGAATGGATTACATGGTGCAAATCAATCATCTATACACAGAAATTGTGCTGCTGATAATAGTGCTGGAATTTTGAGTCGGCTGCTTTCTTCACATTACCATGGGCCTATCCCAGATGAAAAATCTGTAGCACGTCATACAGTGAACCTGCTAACATCAACAATCAAGATTGATGCTGAACAGTCAGATTTAAGGATTAGTGATATGTACTTTGATATTTCATCATTACTCCTCTGTCTCCTCATTAAGGCCATAATTATGCAGGCGGAAAATGCCGTGGACCAGATGGATTGGATGGAAAAGATAACTGGCGTAATTGCCTCCTTATTGAGTGCACAAACACTGTCAGATGACAAAGAAAGCGGTGACTATCACTCTGCCAACAAGCTTTATTTATTACAAGGTCCAGATGATTATAATGCATTGAGTGGGGATTCTATATCATCTGAAGACATGCAAAAGAATAGGCATAGTACAAAAAATGAAAAGCCAATTGAAGTTCTTAGAAAAGTTAGCGGGAATGACAAATGTGCTGATTGTGGTAAACCTGAACCAGACTGGGCATCCTTAAACCTTGGCATCCTTGTATGCATCGAATGTTCTGGGGTTCACCGTAATCTTGGTGTTCACATATCAAAAGTAAGATCACTGACACTTGATGTAAAAGTATGGGACTCCGCTGTGTTGACCATGTTTCAGTCACTGGGGAATTTTTTCGCAAACTCAGTTTGGGAGGAACTGTTGCAGGAAAATACTTCACAAACAGATGACATTGCTGATGGTTCATCCAAGCCACAGAAAAAGTTATTTCATGCAAGAAAACCATCACATGATGATCCTATTTCACTAAAGGAGAGGTTCATTCATGCAAAGTATGCTGCCAAAGTCTTTGTTCGCCGGATAACGAATAACAATCGTCTCCAATCAACAGCACAGCAGGTGGCAGAAAGCATCAGTACCAATGACAAGAAAGCAGTGTACAGACACATTGTGAAGTCAGATGTTGATGTCAATGCTATTAGTGGGGAAGAAGGCTTTTCTTCCAACATGACTTCTCCAGTTAGTCCAAAAGTATCATCTGAAAGTAAAACTCAACCTGTGGAGGACATACAAGATGGTTCTAGTGCACTTCACTTGGCATGCCTAACTAGTGATGTTGCAATGGTGGAGCTGCTCCTACAGTATGGTGCAGACGTAAATTCTGTTGATTCTAGAGGAAGGACACCACTACATTACTGCACTATGAGAGGGAACCATACAATTGCAAAAGTGCTTATTGCAAGGGGGGCCAATCCAATTGCCTTAGACAAAGGAGGGAACACTCCTTTTAAGCCAGCACCAGAACCTAACACTGTTGGCAAAGATTCTCTTACTCAGCAAATCACATGCTCTCAGAACCTTATGGAAAAATGATTCATGGAAACCTTGTATTAATCTACATAAGAGATATAAAAGAATAGAAGAGAGTGATAGATGATACGATGTAATGAGAAGAAAGAAAAGAAAAATGAAAAATATCAATCAGG 2480 0.4105 MFRQQLQCMEESSESLRSRCFKFYKGSRKEGLGEAYDGDVAFANALESFGGGHADPLFVTLGGPVMAKFAMALKEISTYKELLRSQAEHMVNDRLLNMLNVDILDVKEARRRFEKASLVHDQAREKFMSLRKSTRIDIATVVEEELHNARTSFEEARFNLVSALHSVEAKKRFEFLEAVAGVMDAHLRYYRQGYQLLQDLEPFIIEVLAYTQKARESYNDEQISLCERMLEYKKHVHHESMMSLNGPYISPSKDGQVQPFSRISNKVADAVTESAENGKVQIIRQGFLSKRSSNLRGDWKRRYFVLDSRGVLYYFRKAWNGLHGANQSSIHRNCAADNSAGILSRLLSSHYHGPIPDEKSVARHTVNLLTSTIKIDAEQSDLRISDMYFDISSLLLCLLIKAIIMQAENAVDQMDWMEKITGVIASLLSAQTLSDDKESGDYHSANKLYLLQGPDDYNALSGDSISSEDMQKNRHSTKNEKPIEVLRKVSGNDKCADCGKPEPDWASLNLGILVCIECSGVHRNLGVHISKVRSLTLDVKVWDSAVLTMFQSLGNFFANSVWEELLQENTSQTDDIADGSSKPQKKLFHARKPSHDDPISLKERFIHAKYAAKVFVRRITNNNRLQSTAQQVAESISTNDKKAVYRHIVKSDVDVNAISGEEGFSSNMTSPVSPKVSSESKTQPVEDIQDGSSALHLACLTSDVAMVELLLQYGADVNSVDSRGRTPLHYCTMRGNHTIAKVLIARGANPIALDKGGNTPFKPAPEPNTVGKDSLTQQITCSQNLMEK 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00247 788 Gene3D - 273 441 IPR011993 -
Pste2g00247 788 Gene3D Arf GTPase activating protein 461 621 IPR038508 -
Pste2g00247 788 ProSiteProfiles Ankyrin repeat region circular profile. 723 749 - -
Pste2g00247 788 SMART arf_gap_3 480 623 IPR001164 GO:0005096
Pste2g00247 788 ProSiteProfiles Ankyrin repeat region circular profile. 690 721 - -
Pste2g00247 788 Pfam Ankyrin repeats (many copies) 692 744 IPR002110 GO:0005515
Pste2g00247 788 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 463 624 - -
Pste2g00247 788 ProSiteProfiles ARF GTPase-activating proteins domain profile. 480 623 IPR001164 GO:0005096
Pste2g00247 788 MobiDBLite consensus disorder prediction 572 595 - -
Pste2g00247 788 Coils Coil 106 126 - -
Pste2g00247 788 PANTHER CENTAURIN/ARF 1 769 IPR045258 GO:0005096
Pste2g00247 788 SMART 5bar 1 206 IPR004148 GO:0005515|GO:0005737
Pste2g00247 788 SUPERFAMILY PH domain-like 192 424 - -
Pste2g00247 788 SUPERFAMILY BAR/IMD domain-like 1 304 IPR027267 -
Pste2g00247 788 CDD BAR_SFC_plant 5 203 IPR035670 -
Pste2g00247 788 Gene3D - 622 769 IPR036770 -
Pste2g00247 788 ProSiteProfiles PH domain profile. 281 425 IPR001849 -
Pste2g00247 788 PRINTS HIV Rev interacting protein signature 511 528 IPR001164 GO:0005096
Pste2g00247 788 PRINTS HIV Rev interacting protein signature 534 555 IPR001164 GO:0005096
Pste2g00247 788 PRINTS HIV Rev interacting protein signature 492 511 IPR001164 GO:0005096
Pste2g00247 788 SUPERFAMILY Ankyrin repeat 643 764 IPR036770 -
Pste2g00247 788 MobiDBLite consensus disorder prediction 579 595 - -
Pste2g00247 788 Pfam BAR domain of APPL family 2 221 IPR004148 GO:0005515|GO:0005737
Pste2g00247 788 Pfam Putative GTPase activating protein for Arf 482 617 IPR001164 GO:0005096
Pste2g00247 788 CDD ArfGap 483 610 - -
Pste2g00247 788 SMART ANK_2a 723 752 IPR002110 GO:0005515
Pste2g00247 788 SMART ANK_2a 690 719 IPR002110 GO:0005515
Pste2g00247 788 SMART PH_update 282 427 IPR001849 -
Pste2g00247 788 Gene3D Arfaptin homology (AH) domain/BAR domain 1 238 IPR027267 -
Pste2g00247 788 ProSiteProfiles Ankyrin repeat profile. 723 755 IPR002110 GO:0005515
Pste2g00247 788 ProSiteProfiles Ankyrin repeat profile. 690 722 IPR002110 GO:0005515
Pste2g00247 788 Pfam PH domain 283 424 IPR001849 -
Pste2g00247 788 SUPERFAMILY ArfGap/RecO-like zinc finger 479 618 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00247 Pste-Chr2 1535752 1543079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00247 490 621 C2H2 Transcription Factor Family AT4G21160 43.382 5.01e-23 99.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g00247 2 1535752 1543079 Pste2g00247 2 1535752 1543079 ECH
Pste3g01288 3 8105557 8126642 Pste2g00247 2 1535752 1543079 PCT