LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste2g00234	TTCTTTTCTTTTCTCTTTCTCTGTCAGAAGACTAAAAAAACACCTCTGTTGTTGCCTTGTCCGTTTTTTCCTCTCCAAACCAGAGAGCGACCGCCGGCGAGCCTCACCTCGCCGGAAATTCGCTCTTTCTCGCCGGAGCCTCCTTTTTTCTGATTTTAGCTTTCAATTGCGCTTCTTTTTTCACCGGCTCCGTTTCTTGGAGCCGTCAAACTTTTTTCTTTCTCCTTTTTCTTCGCGTCTGAGATTGCAATGCAGAGGGAAGGAGGTTCCTGTGGCGGCACAAAGCGAGGGATCTCTTGTTTCTGAAATTCCTATGTTGTCTCGGACGTTTGAAAGATTCTGTTTTTTGTTTGTTCCTCTTTGTTCTGGATGGGGAGTGTGCTGAATTTTGAGGAGGAGAGGTTTTTGTGCTAGCCAGGCTTTGTTCAAATTGAGAAGGTGAAAGACCTTGAATTTCCCGCAGATGTTTTGGGATAGAGCCTAACAAAGCTAGCAAGGGAGGAGGTTTTCAGTAGTTTCTGGACAAGTTGCAGGATGCCTTCTGAAATAATGGAGAAGAGGGGCGTTTCGACCTCATCCCACTTTTTGGATGACATTTCCTATGCTTCTGAGAAGAATACTGGATTACGGAAGCCAAAATCTACTCACGACCATTTTCTACAAGGGAAGAGTGAAATGGCATCATCACCTGGCAACATTTTGAATACTTCATCACCCCTCGAAACAAATGCAAAAACAGGCTTGCAAATGTCTCAAATTATTCTTTCTGGGGAGATTACGGATGACCTACATTTTGGCAGAGAATCAGGCACTACGGAGATGAAGGATTCCACAGAATCAATGAATTTTCTTAAGAGATCATGGTCTGGTAATGTGCATAGGCAGCCAGCGTCTAGCTCATATGGTTTAATTGGGAGCAAGATTGTCACCAATGCCTCACGTGAAAGTAGTCTATTTTCAAGCTCGCTGTCTGAAATGTTTAGCCAAAAGTTTCTGTTAATATCCTCATGTGTCACTGTGTGTATATATGCATATCTTAATGCAGTGAGGTTATTGGGGAATGGAGTGCAGTCTGATCAACACATTATTGTTGGTTCCCTTCCTGAGGAAGAACCATATAAATCCCTTGAAGAAATTGAGGCTGAAACTATTGGAAATCTCCTTCCTGATGAAGATGACCTCTTTTCTGGAGTCAATGATGAGTTAGAAAGCAATACTTGTACTAGAATGAATGATGATTTTGAAGATTTTGATTTGTTCAGCAGCAGTGGAGGCATGGAGCTGGAAGGAGATGAACATCTAATAACTGGAAAAAGAAACAGCTGTGTGGATGAAGATCCTGATTACTTTGGAGTTTCTAAAGGAAAAATTCCTTTTGGTGAACAATCTTCTAGAACACTTTTTGTTAGAAACATCAATAGCAATGTAGAAGACTCTGAACTAAAGGCTCTCTTTGAGCAATATGGAGATATCCGAACCATATATACTGCCTGCAAGCATCGTGGGTTTGTTATGATTTCTTATTATGATCTAAGGGCAGCACAAAATGCAATGCAAGCACTTCAAAATAGGTCATTGAGGTCAAGGAAACTTGATATACACTATTCAATTCCAAAGGGCAACGCTCCAGAGAAGGATATTGGTCATGGTACACTGATGATATCTGATCTTGATTCATCTGTTTCGAATGATGAACTAAAACAGATTTTTGGGTTTTATGGAGAAATTAGAGAAATCTATGAATATCCACAATTGCATCGTATAAAATTTATTGAATTTTATGATGTCCGAGCTGCAGAAGCTTCTCTTCGGGCATTGAATGGGATCTGCTTTGCTGGGAAGCACATTAAGCTTGAACCTGGCCTTCCCAAGATTGCAACATGTATGATGCAGCAGTCTCAAAAGGGAAAAGATGAACCTGATCTTGGTCATAGTCTGAGTGACAACGTATCCTCAAGACATAAGGGATTGTCATCTGGATTTATTACATCTGGCGGCAGCTTGGAAAATGGATATAATCAGGGATTTCAGTCTGCAACTCTGCTACCTGCTTTTCTTGATAACTCACTGTTTCATGTGAATTCTAGCATTCACAAGACCACAAGAGGGGCATCTACCGGAAAAGTATCTGGTGTTTTTGAGGCCAATAGCACTATTGATGCAATGAAATTTGCATCCATTTCGAGGTTTCATCCTCATTCATTACCTGAATACCGTGATAGTTTAGCTAATGGCAGTCCTTACAACATTTCAAGTACCATTAACATGGCTGCCAATGTTGGAACTGGATCAATGGAATCATCTGACAGCAGGCACATTCAGGGAATGAACTCAACTGGAAATGGAAACCGCCCTCATCATGGACTTCATCATATGTGGAATGGCTCCAACTTGCATCAGCAACCTCCTCAAAATCCCCTGCTTTGGCAGAAAACACCATCCTTTGTTAATGGTACTTGTTCTCCATGTCTTCCTCAGATACCCAGCTTTAGTAGAACACCACCTCATGTGCTTAGAGCATCACATATAGATCATCAAGTGGGATCAGCACCAGTTGTTACTGCTTCGCCCTGGGAAAGGCAACATTCTTACTTGGGAGAGTCACCTGATGCTTCTGGTTTTAGATTAGGTTCTGTAGGAAGTCCAGGCTTTCATGGTAGCTGGCAGTTGCATCCTCCTGCTTCTCCCAATATATTTTCTCATGTTGGTGGGAGTGGTACTGAATTGGCTTCAAATGTTGGGCAAGGCTCTCCTAAGCAATTGTCACATGTTTTCCCTGGAAGACTTCCCATGACTTTGGTTTCTAAATTTGATTCTACCAATGAGCGAATGAGAAACCTCTATCCTCGTAGAAGTGAACCAAACACTAACAACAATGCTGATAAAAAACAGTATGAACTTGACCTAGGCCGCATATTGCGTGGTGATGACAACCGAACAACACTCATGATAAAAAATATTCCCAATAAGTATACTTCAAAGATGCTTCTAGCTGCCATAGATGAGCAATGTCGGGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGGCAAGTATTTATTTGGACTTGCTAAACAAATGTAATGTTGGCTATGCATTCATCAATATGATTGATCCTGGTCAAATTATTCCATTCCACAAGGCTTTTAATGGGAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTAGCAGTCCTTGCCTATGCTCGAATTCAAGGAAAAGCTGCTCTTATTGCTCATTTCCAGAATTCGAGTCTGATGAATGAAGATAAACGTTGCCGCCCTATTCTCTTCCATACTGATGGCCCAAATGCTGGTGATCCGGAACCTTTCCCCTTGGGTAACAATATTAGAGTGAGACCTGGAAAAGCTCGCATTAATGGCAATGAGGAGAATCGCAGCCTAGGGATTCCTTCCTCTGTGACAAGTGGAGAAGAGTCTGGGAATGGAATAGAATCTTCATCGAGCTCTTCAAAAAATTCTGACTGATATAGCCTCGTGATCTAACAGTTCAATGTTGCATGTGATGTCAACTCCAAGACTGTATATTTGCATTTTGTTTTTGTTCGATGGAGCAAGAGTGGAGTTGGAGCCGGTAGGAAAAGGGGCTCACAATTTTTTCCTATAGAGGAGCCTTGCAAGAGTTTTTGGAAGCTGAGGTACATAACCAGAATGAAGTCTCTGATTCTAGTGTTTTCCATTATTTTCCTAAAATTTTGCATGGAATACTGCTACCATCTTACAAGTTTAGAGAATGGCTTAACTGAAGCTTAAAATTTTGGCTAGCTGTGAATGGACAATGTGACGATTTGCAGTTCCCTTGAGATAATGCCATCATTGCAAGTTTCAAGGGTTCTTTGCTGGTTTTGATTTCATTGTTATCTTTAATGTTCATATGTAATTTTGTTTCCTTATATCCTGGGACACTGGTGTCCTTATGGGATTTGTTGTCCATATGATGGATGGTTGAGGAAGACATTTAAATGGAACACTTTCTTCTTTGGTAGTAG	4013	0.4099	MPSEIMEKRGVSTSSHFLDDISYASEKNTGLRKPKSTHDHFLQGKSEMASSPGNILNTSSPLETNAKTGLQMSQIILSGEITDDLHFGRESGTTEMKDSTESMNFLKRSWSGNVHRQPASSSYGLIGSKIVTNASRESSLFSSSLSEMFSQKFLLISSCVTVCIYAYLNAVRLLGNGVQSDQHIIVGSLPEEEPYKSLEEIEAETIGNLLPDEDDLFSGVNDELESNTCTRMNDDFEDFDLFSSSGGMELEGDEHLITGKRNSCVDEDPDYFGVSKGKIPFGEQSSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTACKHRGFVMISYYDLRAAQNAMQALQNRSLRSRKLDIHYSIPKGNAPEKDIGHGTLMISDLDSSVSNDELKQIFGFYGEIREIYEYPQLHRIKFIEFYDVRAAEASLRALNGICFAGKHIKLEPGLPKIATCMMQQSQKGKDEPDLGHSLSDNVSSRHKGLSSGFITSGGSLENGYNQGFQSATLLPAFLDNSLFHVNSSIHKTTRGASTGKVSGVFEANSTIDAMKFASISRFHPHSLPEYRDSLANGSPYNISSTINMAANVGTGSMESSDSRHIQGMNSTGNGNRPHHGLHHMWNGSNLHQQPPQNPLLWQKTPSFVNGTCSPCLPQIPSFSRTPPHVLRASHIDHQVGSAPVVTASPWERQHSYLGESPDASGFRLGSVGSPGFHGSWQLHPPASPNIFSHVGGSGTELASNVGQGSPKQLSHVFPGRLPMTLVSKFDSTNERMRNLYPRRSEPNTNNNADKKQYELDLGRILRGDDNRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKASIYLDLLNKCNVGYAFINMIDPGQIIPFHKAFNGKKWEKFNSEKVAVLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGNNIRVRPGKARINGNEENRSLGIPSSVTSGEESGNGIESSSSSSKNSD	985

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste2g00234	985	CDD	RRM3_MEI2_like	804	897	IPR034454	-
	Pste2g00234	985	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	289	353	IPR000504	GO:0003723
	Pste2g00234	985	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	374	439	IPR000504	GO:0003723
	Pste2g00234	985	SUPERFAMILY	RNA-binding domain, RBD	803	896	IPR035979	GO:0003676
	Pste2g00234	985	CDD	RRM1_MEI2_like	286	361	IPR034453	-
	Pste2g00234	985	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	372	445	IPR000504	GO:0003723
	Pste2g00234	985	MobiDBLite	consensus disorder prediction	943	985	-	-
	Pste2g00234	985	FunFam	MEI2-like protein 5 isoform 2	276	370	-	-
	Pste2g00234	985	MobiDBLite	consensus disorder prediction	955	985	-	-
	Pste2g00234	985	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	96	982	-	-
	Pste2g00234	985	Pfam	RNA recognition motif 2	801	905	IPR007201	-
	Pste2g00234	985	FunFam	Protein MEI2-like 1	371	465	-	-
	Pste2g00234	985	MobiDBLite	consensus disorder prediction	454	475	-	-
	Pste2g00234	985	Gene3D	-	281	369	IPR012677	-
	Pste2g00234	985	SMART	rrm1_1	288	356	IPR000504	GO:0003723
	Pste2g00234	985	SMART	rrm1_1	373	441	IPR000504	GO:0003723
	Pste2g00234	985	Gene3D	-	370	465	IPR012677	-
	Pste2g00234	985	SUPERFAMILY	RNA-binding domain, RBD	284	444	IPR035979	GO:0003676
	Pste2g00234	985	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	287	360	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste2g00234	Pste-Chr2	1401112	1409547	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste2g00234	282	438	Eukaryotic Initiation Factors Gene Family	AT3G16380	25.843	8.64e-10	60.5

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste2g00234	2	1401112	1409547	Pste2g00234	2	1401112	1409547	ECH
	Pste3g01303	3	8184029	8192310	Pste2g00234	2	1401112	1409547	PCT