LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste2g00147	GATCAGAATTTTTAACTGCTATTCTGAAGTTGTCTGAGTCTGAGCTGTTAATTTTGCCAACACAATTTTGTTTGTGTGTGAAAAGGAAAAAGTGAAAGAAGAAACTGGGTGTGGTAGCTGTAGGAAACTAGATAAGTATTATTCTTCTCATTGAGTGAGGTTTTGAATTGTTCAAAACTTGAGATGGCATCATTTGCAGGTACTACCCAGAAGTGCAAAGCTTGTGAGAAGACTGTGTATTTGGTGGATCAGCTCACTGCTGACAACAAGATCTATCACAAATCATGTTTCAGATGCTATCACTGCAAGGGTACCCTTAAGTTGAGTAATTATTGCTCCTTTGAGGGTGTTTTATACTGTAAGCCTCATTTTGATCAACTCTTCAAGAAGACTGGCAGTTTGGACAAAAGTTTTGAAGGCATTCCAAGAACTGCTAGACTTGAAAGATCTGCTGATCAGGTCCAAACCAATAGCAAGCTTTCAAATTTGTTTGCTGGAACTCAGGAAAAATGTGTTGCTTGCAAGAAAACTGTGTATCCAATTGAAAAGGTAGCTGTTGATGGAACATCATACCATAAGGCTTGTTTCAGGTGCAGTCATGGAGGATGTGTAATTAGTCCATCAAATTATGTGGCACATGAACATCGCCTTTATTGTAGGCACCATCACACTCAGCTGTTCAAGGAGAAAGGTAACTTTAGCCAACTTGACAAGAAAGAAAATAATGAAGGGGTGAATGAGAACACAATATCTGAGTAATATCTTGCAACTTTCAAGTTACAGCAGAAATGCATGTTCAAATGGTGACACTTTTTCAGGCAATACATGCCTTAGTTTCAATCCACATACTTTATGTATTTGAAAATTTTTGTGAGACAAATTTTGGGGTTGATAGTTGAGAAGTAATTAGTAGATAAATCGGCTTAATCATATGGCTGACCAATCTGTATTTTGCTTTGAACCTTTATAAAGTTTGTACTTCATTACTGTGATAAAATCTGGTCTTCTCTGTAAATTTCCTGTTGATTTTATTATTCACATTAAAAAATTTCTACAGTAGACTACTTTG	1069	0.363	MASFAGTTQKCKACEKTVYLVDQLTADNKIYHKSCFRCYHCKGTLKLSNYCSFEGVLYCKPHFDQLFKKTGSLDKSFEGIPRTARLERSADQVQTNSKLSNLFAGTQEKCVACKKTVYPIEKVAVDGTSYHKACFRCSHGGCVISPSNYVAHEHRLYCRHHHTQLFKEKGNFSQLDKKENNEGVNENTISE	191

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste2g00147	191	CDD	LIM1_SF3	7	69	-	-
	Pste2g00147	191	ProSitePatterns	LIM zinc-binding domain signature.	11	45	IPR001781	-
	Pste2g00147	191	Gene3D	Cysteine Rich Protein	5	75	-	-
	Pste2g00147	191	Gene3D	Cysteine Rich Protein	104	174	-	-
	Pste2g00147	191	ProSiteProfiles	LIM domain profile.	9	69	IPR001781	-
	Pste2g00147	191	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	3	36	-	-
	Pste2g00147	191	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	102	135	-	-
	Pste2g00147	191	FunFam	LIM domain and actin-binding 1	104	174	-	-
	Pste2g00147	191	Pfam	LIM domain	11	65	IPR001781	-
	Pste2g00147	191	Pfam	LIM domain	110	165	IPR001781	-
	Pste2g00147	191	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	37	77	-	-
	Pste2g00147	191	ProSiteProfiles	LIM domain profile.	108	168	IPR001781	-
	Pste2g00147	191	CDD	LIM2_SF3	110	170	-	-
	Pste2g00147	191	PANTHER	OS06G0237300 PROTEIN	2	94	-	-
	Pste2g00147	191	FunFam	LIM domain and actin-binding 1	5	75	-	-
	Pste2g00147	191	SMART	lim_4	10	62	IPR001781	-
	Pste2g00147	191	SMART	lim_4	109	161	IPR001781	-
	Pste2g00147	191	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	136	174	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste2g00147	Pste-Chr2	648781	652456	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	LIM	Pste2g00147		LIM	1.2e-10	CL0167

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste2g00147	2	648781	652456	Pste2g00147	2	648781	652456	ECH
	Pste6g02309	6	11139197	11142634	Pste2g00147	2	648781	652456	PCT