Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00080 AGTGTCTCCTCTGTTATACGTTTCAAGGAGCAGAGGAAGTAAAACGTAGCCAACAACAACCACCGCAAACATCATCAACAACAACAAAGAAACTGGCAAATCACAGGATTTTTTCACCTAAAGAGTACAACACACAGCAGAGAGAAGAACAAACGCGAATGAAGGGTGAAATAGAGTTGCCTCCTGGGTTCAGATTTCACCCCACTGATGAGGAATTGGTTAATCACTACTTGTGTAAGAAATGTGCTGGTCAACCAATCTCTGTTCCCATCGTCAAAGAGGTCGATTTGTACAAGTTTGATCCATGGCAGCTTCCTGAAATAGGATTTTACGGCGAGAAAGAATGGTACTTTTTTTCTCCTCGGGACCGGAAGTACCCCAACGGTTCACGCCCGAATCGGGCCGCCGGAAGCGGCTATTGGAAAGCCACCGGAGCCGATAAACCCATCGGAAAACCCAAAGCACTTGGGATCAAGAAAGCTCTGGTCTTTTATGCTGGAAAAGCTCCCAAAGGAGTCAAAACCAATTGGATCATGCACGAATATCGCCTCGCCAATGTTGACCGATCTGCCTCCAAGAAAAACACCAACTTGAGGCTTGATGATTGGGTATTGTGTCGAATTTACAACAAGAAAGGGAAGATTGAGAAATACAACAGTGGAGCACCAAAAATGAATGCAGGGGTGGTTCAAGATTTTGAGCATGAGAACGAGACCAAACCAGAGATTCACAAGCTTGGGAATGATCATTTGTACATGGAGACTTCAGATTCAGTACCTAGATTCCACACGGATTCGAGCAGTTCGGAGCACGTGGTTTCGCCCGATATCACATGTGAGAGGGAGGTGGAGAGCGACCCAAAGTGGAATGAGCTGGGCCTACAGCTAGAAAACGCGTTTGATTTTCAGTTTAATTACTTGGATAATAACCTTTCGGTGGATGATCCTTTTGGCACGGTTCAGTATCAAATGGGCCAACTCTCTCCCTTGCAAGACATGTTCATGTACCTACAGAAGCCGTATTGATGTGAAAACGAAACATTTTGGACAAGGGGGTTGCCTGCATAACATGGGACCCGCAGATATCTTTATCAATTTTTTGTAGGAAAAGTCAGCATTTGTATGCAATTGCACCTAACTACTACTTGTGGTATGCTTTGTGTGTGAATTCACAGTGGTGCACGTGTAGTAGCTATTCTTATTCTTTGTTCTTGAGAGATCAGGGAATGTTGAAGAGTAAAGAAAGAAAGGAAATGAGAAAAAGGAGGTTAGGTGCTGCAGTAAGTTAAAAAGTAAGAAGCTCAATGATCTTAACTAGGTGTTGATTCAGTGGTTCATGATAGGATATTGGAGGTTTAATGTGTAGGTGTAAGGACTCCCGTAGGAAAATTCTTGTTCCATTGCTATTGCAGTAAGATTTTTTCATATATTTGTAATATACAATTTCTACTTTTCAATTCAAAGGAAACAAATGAATGAAAATTCTTCCATTCAAAGGATGGAAATAAATCAAATAATGGTTCAACCTTGCCTCTCCTCAG 1540 0.4227 MKGEIELPPGFRFHPTDEELVNHYLCKKCAGQPISVPIVKEVDLYKFDPWQLPEIGFYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKPKALGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSASKKNTNLRLDDWVLCRIYNKKGKIEKYNSGAPKMNAGVVQDFEHENETKPEIHKLGNDHLYMETSDSVPRFHTDSSSSEHVVSPDITCEREVESDPKWNELGLQLENAFDFQFNYLDNNLSVDDPFGTVQYQMGQLSPLQDMFMYLQKPY 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00080 288 ProSiteProfiles NAC domain profile. 7 158 IPR003441 GO:0003677|GO:0006355
Pste2g00080 288 PANTHER NAC TRANSCRIPTION FACTOR 56 7 202 - -
Pste2g00080 288 FunFam NAC transcription factor 16 162 - -
Pste2g00080 288 SUPERFAMILY NAC domain 3 158 IPR036093 GO:0003677|GO:0006355
Pste2g00080 288 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Pste2g00080 288 Gene3D NAC domain 16 163 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00080 Pste-Chr2 280985 282799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00080 1 288 NAC Transcription Factor Family AT1G01720 61.333 2.79e-126 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste2g00080 NAM 1.4e-38 No_clan