Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g04378 CCTGCGGCGCGTTGCAATTGTTTCGCAGTTGTTGTGTTGTGCTGTGCGAAGTGAAAATGGCTGCTTCAGTCACAGCGAGCGCAACCACGAACACAAACACGGGTGTGGAGTGGCACGTGCGTCCTCCGAACCCTAAGAACCCAATCGTCTTCTTCGATGTCACCATCGGCAATTGTGCACTGGTGAGTATAGGATTACCTGTTGGTTACAAAGGTTGTCAATTTCATAGAGTGATTAAGGATTTTATGATTCAGGCTGGTGATTTTGTTAAGGGTGATGGTAGTGGATGTGTTTCCATCTATGGACTCAAGTTTGATGATGAAAACTTTACCGCCAAACACACTGGTCCCGGCCTTCTGTCGATGGCAAATAGCGGACCAAACACCAATGGTTGTCAGTTCTTTATAACATGCGCAAAATGTGACTGGCTTGACAACAAGCATGTCGTTTTTGGGAGAGTGCTTGGAGATGGTCTTTTGGTTGTCAGAAAAATTGAGAATGTGGCAACTGGACCGAATAACAGGCCAAAATTAGCTTGCGTCATTGCTGAATGCGGTGAAATGTAAATCTTGATGCAACTTCACTAACAAACGATTGTTCCCTAAGCAATAATTCATTGAATCCTCTACAGAAAATGCACTTACTAAAATAAATATTCTTGTCATGGAATTTTCTTTATGTAAAACTGGATAATTATATCAGGAGACAGTTGAATAGCACAGCTAAAAAATGAGCTAATTGAATAGTCATGCTTGGGAATGATAGAATGATCTTTCTATGATGCATCCTTCTTGCGTATTATCATCGCCACACATACATAAAGTTGCTAATATAGTGATTATAATTTCTTATGTATTTCTTGTGGCTTTCTACACCATACAGATGTATTTCTTGTGGCCC 900 0.4089 MAASVTASATTNTNTGVEWHVRPPNPKNPIVFFDVTIGNCALVSIGLPVGYKGCQFHRVIKDFMIQAGDFVKGDGSGCVSIYGLKFDDENFTAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVIAECGEM 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g04378 169 FunFam Peptidyl-prolyl cis-trans isomerase CYP19-2 39 169 - -
Pste1g04378 169 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 50 167 IPR002130 GO:0000413|GO:0003755
Pste1g04378 169 Gene3D - 41 169 IPR029000 -
Pste1g04378 169 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 51 68 IPR020892 GO:0003755|GO:0006457
Pste1g04378 169 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 127 142 IPR002130 GO:0000413|GO:0003755
Pste1g04378 169 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 114 126 IPR002130 GO:0000413|GO:0003755
Pste1g04378 169 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 56 68 IPR002130 GO:0000413|GO:0003755
Pste1g04378 169 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 99 114 IPR002130 GO:0000413|GO:0003755
Pste1g04378 169 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 44 169 - -
Pste1g04378 169 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 26 168 IPR002130 GO:0000413|GO:0003755
Pste1g04378 169 SUPERFAMILY Cyclophilin-like 19 169 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g04378 Pste-Chr1 29890448 29902438 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g04378 51 166 U-box Gene Family AT5G67530 47.009 2.90e-24 96.7