Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g04359 CCTAGAGTCAGCTTCTTCCTCTGCGCAGGAATTAGGGTTATTCAACAGCTAGGGTTTCCTCAATGGCTCCGTCCAAAGTTGATGGTTCTAAGAAGAGTGATGCAAAGACACAGGCCTTGAAGACTGCTAAGGCAGTGAAGTCTGGTGCTACCTTCAAGAAGAAGGCGAAGAAGATAAGAACTTCTGTGACATTCCACAGGCCGAAGACATTGAAGAAGGATAGGAACCCCAAGTACCCTCGCATCAGTGCGCCACCAAGGAATAAGCTTGACCATTATCAGATCCTGAAGTACCCTCTCACCACTGAGTCTGCTATGAAGAAGATTGAGGACAACAACACTTTGGTTTTCATTGTTGACCTGCGTGCTGACAAGAAGAAGATCAAGGATGCCGTCAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGGCCTGATGGTACCAAGAAGGCCTACGTTAGGTTGACTCCTGATTACGACGCATTGGATGTGGCAAACAAGATCGGGATTATCTAAGGTAGTACCTGGGTTTTATTAAATTTTAAGCAGTTCTATGGTGATCGTTCTTGAGGGAAACATTTAGAAAAAAGATAGGTTCTATGTTTTGTGCTTCTTTATTTTGTATCTTTGGTTCATTTGACACTCAGCAGACCTTGTGGTTCAATTTTGACTACAGAGCTCTTTAAACATTAAATTTATGATTGAAATGAGCATGTAAAAATATTCTCATTGAGTGAGTTGGTACTCACAGAACGTGAGGCTGATGAGTGTCCCAAAGTTGATTGCTTAAAACATGTGGGGTTAAGGAAATTGTATAGGGTACGTAGTCTGGTA 845 0.4213 MAPSKVDGSKKSDAKTQALKTAKAVKSGATFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g04359 154 FunFam 60S ribosomal protein L23a 32 154 - -
Pste1g04359 154 Pfam Ribosomal protein L23, N-terminal domain 14 64 IPR005633 -
Pste1g04359 154 Gene3D - 35 154 IPR012677 -
Pste1g04359 154 Hamap 50S ribosomal protein L23 [rplW]. 74 154 IPR013025 GO:0003735|GO:0005840|GO:0006412
Pste1g04359 154 Pfam Ribosomal protein L23 74 136 IPR013025 GO:0003735|GO:0005840|GO:0006412
Pste1g04359 154 MobiDBLite consensus disorder prediction 30 45 - -
Pste1g04359 154 NCBIfam 50S ribosomal protein L23 78 154 IPR019985 GO:0003735|GO:0005840|GO:0006412
Pste1g04359 154 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 71 147 IPR012678 GO:0003735|GO:0005840|GO:0006412
Pste1g04359 154 PANTHER 60S RIBOSOMAL PROTEIN L23A 7 154 IPR013025 GO:0003735|GO:0005840|GO:0006412
Pste1g04359 154 MobiDBLite consensus disorder prediction 30 65 - -
Pste1g04359 154 ProSitePatterns Ribosomal protein L23 signature. 132 147 IPR001014 GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g04359 Pste-Chr1 29380654 29382873 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g04359 1 154 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 86.364 7.02e-71 208